BAC Information

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BAC

Clone NameMSMg01-081B22
Chromosome1 (Build37)
Map Location 176,124,019 - 176,124,478
singlet/doubletsinglet
Overlap geneSpna1
Upstream geneOlfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420
Downstream geneOlfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081B22.T7 (MSMg01no081_b22.b1)MSMg01-081B22.TJ (MSMg01no081_b22.g1)
ACCAG301796AG301797
length719722
length of high quality
(start - end)
547 (40 - 586)460 (75 - 534)
definitionCHROMAT_FILE: MSMg01no081_b22.b1 PHD_FILE: MSMg01no081_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:13 2005CHROMAT_FILE: MSMg01no081_b22.g1 PHD_FILE: MSMg01no081_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAATTTGCGGCGCTAAACGACTACTATTCCGATAGGATCCGCGGAAT
TCCAGTAATATCAGTAATATTAAATGATCTACAAAAACCACTCAAATGCT
TGACTGTAATAGCCAGTTCCATTATCTGTTTTGATCTGATTTGGAACACC
AAACATAGAAAACAATGCAGAAAATGACTAATTACATTTTTAGGTGTTTC
TTCTGCTAAAGCAGTTGCAATTAGAAAGCCTGACAAGGTGTCCAATAGTC
ACATGTGTGTATTTTACTTTTCTAAAATCAGGAATATGACTATTATCGAT
TTGTAATAATTGATTAAGTGTAAGTCCTCGAGGATTAACACCATTACGTG
GTATAGGTAGACACTGAGGACATTGAAAAGAAGTCTTTATAATTTTACTT
GCATGTTTTCTAGAAATACCAAATTATTGTCTCAAGCTATTACTATTTTG
ATGATGTAAAGAACGATATTTTATGGCCAATTGTTCCTGTGTAAGGCCTA
TAGTCATCTTGTATACAAATCAGATGTGGCATTGCCCTAAGGGGTCTTGT
CCAGGCAATCCAGTATGAGCTCTTAAATATCTAGTCCTTTAAAGGAACAG
TAATTTTGACTTGAGTTGTATTTGCATAAATAATTGCAAAATTTGACAAT
TAGCAGTATCTAAAATACGAACAACTTCCAAGAATTTGCAAACTATGAGC
TACATATTGGCTATCAGTA
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGGTACATTGTTAGAAAGAGAAGT
TAGTGACCCCCAGCAACTTTCACATTCGGAAACTAAAAAGGGGCAGGGCA
AAGATTCTAGCCCAGGTCTGCACTTTAGGCTTGATGTGCTTTTAATCTGT
GTTGGAAACATGATTTAAACAATTCAGTGACTCTGAACACATTCCAATTC
AGAAAGAAGCTAGCTCTTCATTCATAGAATAGACTTGGTCCCTTCAATCC
ATAATGCTACATAAGGTAATACGTCTACATAATCCAAATGATTAAGTTAC
TTTTAAGCTTATTTAAGCTCTAAAATTTTGAATGTACCATTTGAATCATA
CAGACTCTTAACAATTACAAAGGCATAGAGGAGAACAAGGTATGGTGTTG
GCACACGCCTTTAATTCCAGATACTCCAAAGCTGAGGTAGGGTGATTTTG
TGTTTGAGGCATGGTAGGAGAACATAATATGTATGTCTTAAGGTAAGACA
AATTAAAGAGGCATGTATAGAAGCAGAAGGAGTACTATAAGGACAAAAAT
AATCAAATTAAAAAAGATCTCTGTCTCCCCATTCTGTTTAGGACAGTATA
AAGCATTCCAGCTGAGTGGGGACAAATAATTGGGATTTGGAAACGCCACT
GCCAATGAATTTAACAGGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_b22.g1 MSMg01no081_b22.g1 CHROMAT_FILE:
MSMg01no081_b22.g1 PHD_FILE: MSMg01no081_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:13 2005
         (460 letters)



>mm_chr1_176123812_176124671
          Length = 860

 Score =  890 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggtacattgttagaaagagaagttagtgacccccagcaactttcacattcggaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 actggtacattgttagaaagagaagttagtgacccccagcaactttcacattcggaaact 608

                                                                       
Query: 61  aaaaaggggcagggcaaagattctagcccaggtctgcactttaggcttgatgtgctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaaaaggggcagggcaaagattctagcccaggtctgcactttaggcttgatgtgctttta 548

                                                                       
Query: 121 atctgtgttggaaacatgatttaaacaattcagtgactctgaacacattccaattcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atctgtgttggaaacatgatttaaacaattcagtgactctgaacacattccaattcagaa 488

                                                                       
Query: 181 agaagctagctcttcattcatagaatagacttggtcccttcaatccataatgctacataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agaagctagctcttcattcatagaatagacttggtcccttcaatccataatgctacataa 428

                                                                       
Query: 241 ggtaatacgtctacataatccaaatgattaagttacttttaagcttatttaagctctaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggtaatacgtctacataatccaaatgattaagttacttttaagcttatttaagctctaaa 368

                                                                       
Query: 301 attttgaatgtaccatttgaatcatacagactcttaacaattacaaaggcatagaggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 attttgaatgtaccatttgaatcatacagactcttaacaattacaaaggcatagaggaga 308

                                                                       
Query: 361 acaaggtatggtgttggcacacgcctttaattccagatactccaaagctgaggtagggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acaaggtatggtgttggcacacgcctttaattccagatactccaaagctgaggtagggtg 248

                                                   
Query: 421 attttgtgtttgaggcatggtaggagaacataatatgtat 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attttgtgtttgaggcatggtaggagaacataatatgtat 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)