BAC Information

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BAC

Clone NameMSMg01-081C15
Chromosome1 (Build37)
Map Location 43,524,430 - 43,524,673
singlet/doubletsinglet
Overlap geneNck2
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644
Downstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081C15.T7 (MSMg01no081_c15.b1)MSMg01-081C15.TJ (MSMg01no081_c15.g1)
ACCAG301830AG301831
length703705
length of high quality
(start - end)
411 (37 - 447)245 (64 - 308)
definitionCHROMAT_FILE: MSMg01no081_c15.b1 PHD_FILE: MSMg01no081_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:17 2005CHROMAT_FILE: MSMg01no081_c15.g1 PHD_FILE: MSMg01no081_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTAAACGACTCCTATTCAAAGAGGATCCGCGGAATTCTAT
CTTGCCCATTTGGAGCTTTTGGGTTAATATCCACTTATCAGTCACTGCAT
ACTATGTATATCCTTTTGCCATTGGGTTACCTCACTCAGGATGATATTTT
CTAGTTCTTTCTATTTGCCTAAGAATTTCATGAGTTCATCTTTTTAATAA
CTGAATAGTACTCCATTATGTAAATATACCACATTTTCTGTATGCATTCC
TCTGTTGAAGGATATCTGAGTTCTTTCCAGCTTCTGGCTATTATAAATAA
GGCTTCTATGAACATGGTAGAGCATGTGTCCTTATTATATGTTGAAGCAT
CTTCTGGGTATATGCTCAGGACTGGTATAGCTGGGTCCTCAGGTAGTACT
ATGTCCAATTTTCTGAGGACCTACCAAACTGATTTCCAGAGTGGCTGTAC
CAGCTTGCAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCCAGATC
CTTGCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACT
CGTGTGAGGTGTAATCTCAGAGTTGCTCTGATTTGTATTTCCCCGATGAC
TATTGATATGGATCATTTCTCCACGAGCTTCTTGATCATTCTATATTCCT
ATTTTGAACACTCTTCGTTTATCTCTGTATTTCTTTTTCTAACAGGGTCA
TTT
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAGGCCAGCCTGGCTATGAGTCCCTGTCGCAAAGAAA
GAAATACACAATATCAAAAAAAGAGAAAAAGAAGACAGCTGGGATTGGTC
AGTTGCATGCTGCTTGTGGCCGCTTTCGTGGTAGCATAGTCGTGGTAGCA
TAGTCGTGGTAGTGTAGTGGGATTGAGTAATTGTGAGCTTGTGACCCACA
AGGCCAACAAACTGTGTTTTTTTCGATCTTTCTGGAAGAAGCCTGTTCAC
CCTGTACGCCTGTATGTACAGATCTGAAGTGTGACAATGCTGCTTTGGAG
CCTTGCCTGCCCCTTTCTTGGCACCATAGCTCTGCACTGTTTTCTGGTGC
AAGAGGAGGAGGCAGCCTTCAGCTTAGGGTTTCTGAAACACTGAGTGGTT
CCTGGTTTATACCCTATGTCTTAATCTGTAGACTTGCTTGTTTCTTCATG
GAACATTTGAGGTAAATTTCAAAGTATTATCCTGTATATACAGAGGGCTA
TCTGTGTGCGATTTCTACAGATATTACCCCCGTGACCCCCGCGACCTCCT
CTGAAAATTATAAGGAATCAGACAGATTTTAGTGCAATGCGGATGAACCC
TTGTAAATCCCTTGTCTTGCCCACCTTTTATTTTTCGTGTTTTCTCTTTA
CTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_c15.g1 MSMg01no081_c15.g1 CHROMAT_FILE:
MSMg01no081_c15.g1 PHD_FILE: MSMg01no081_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:17 2005
         (245 letters)



>mm_chr1_43524230_43524873
          Length = 644

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcctggctatgagtccctgtcgcaaagaaagaaatacacaatatcaaaaaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 201 aaggccagcctggctatgagtccctgtcgcaaagaaagaaatacacaaaatcaaaaaa-g 259

                                                                       
Query: 61  agaaaaagaagacagctgggattggtcagttgcatgctgcttgtggccgctttcgtggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaaaaagaagacagctgggattggtcagttgcatgctgcttgtggccgctttcgtggta 319

                                                                       
Query: 121 gcatagtcgtggtagcatagtcgtggtagtgtagtgggattgagtaattgtgagcttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcatagtcgtggtagcatagtcgtggtagtgtagtgggattgagtaattgtgagcttgtg 379

                                                                       
Query: 181 acccacaaggccaacaaactgtgtttttttcgatctttctggaagaagcctgttcaccct 240
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 acccacaaggccaacacactgtgtttttttcgctctttctggaagaagcctgttcaccct 439

                
Query: 241 gtacg 245
           |||||
Sbjct: 440 gtacg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)