Query= MSMg01no081_c20.b1 MSMg01no081_c20.b1 CHROMAT_FILE:
MSMg01no081_c20.b1 PHD_FILE: MSMg01no081_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:18 2005
(502 letters)
>mm_chr1_13239458_13240362
Length = 905
Score = 888 bits (459), Expect = 0.0
Identities = 487/497 (97%), Gaps = 3/497 (0%)
Strand = Plus / Plus
Query: 6 gaattcctgta-ataccagatgtggaagtccacaaaaccacttgagcctctagcatcctt 64
||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 206 gaattcctgtacatagcagatgtggaagtacacaaagccacttgagcctctagcatcctt 265
Query: 65 ccttcagagagcaagtgagacgctcacctctgacagcctctgctgctgggt--tcaccct 122
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 ccttcagagagcaagtgagacgctcacctctgacagcctctgctgctgggttatcaccct 325
Query: 123 gtgaacactcactagggactgcattctttctaccagagcaaaatgagccttatagacgac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 326 atgaacactcactagggactgcattctttctaccagagcaaaatgagccttatagaagac 385
Query: 183 ccaacagtattctgagtagagactgctagcttgtcgggttattttcagcagtcgctccta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaacagtattctgagtagagactgctagcttgtcgggttattttcagcagtcgctccta 445
Query: 243 taaagagcagtgcatgaatgtctcagtccatcccactgcaggaggggactgaggagaagg 302
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 446 taaagagcagtgcatgaatgtctcagtccatcccactgcaggagaggactgaggagaagg 505
Query: 303 gctgcgaactgcgactttctctaaacacaacactgccaagtcccacttttgaagtcaggc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gctgcgaactgcgactttctctaaacacaacactgccaagtcccacttttgaagtcaggc 565
Query: 363 acagggtgcacgatgcacttccagtccagcttctgcccctcacctaagatttcagaagct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acagggtgcacgatgcacttccagtccagcttctgcccctcacctaagatttcagaagct 625
Query: 423 tcaaaccacagcaccaggctcgccactggtgcagctgcaaacaatctaaacttcctttta 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcaaaccacagccccaggctcgccactggtgcagctgcaaacaatctaaacttcctttta 685
Query: 483 gatgaatctattcttca 499
|||||||||||||||||
Sbjct: 686 gatgaatctattcttca 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 905
Length adjustment: 10
Effective length of query: 492
Effective length of database: 895
Effective search space: 440340
Effective search space used: 440340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_c20.g1 MSMg01no081_c20.g1 CHROMAT_FILE:
MSMg01no081_c20.g1 PHD_FILE: MSMg01no081_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:18 2005
(490 letters)
>mm_chr1_13356372_13357261
Length = 890
Score = 932 bits (482), Expect = 0.0
Identities = 488/490 (99%)
Strand = Plus / Minus
Query: 1 ttctgtctgctcaattgtttgcagggagcaggcgcgctttcaggaaactcgctcctgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttctgtctgctcaattgtttgcagggagcaggcgcgctttcaggaaactcgctcctgtgc 487
Query: 61 tctgccaggatctgcacgcattgcttgtaatgttccagctgccaggacccagggcctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctgccaggatctgcacgcattgcttgtaatgttccagctgccaggacccagggcctgtt 427
Query: 121 gtcagagatgaaaatgatgcatgggattttttgttggtcacttatgtccccaaaggcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtcagagatgaaaatgatgcatgggattttttgttggtcacttatgtccccaaaggcttc 367
Query: 181 acttggagagtgagtgagttccggaacttgctgctcgctgccctctgcccattagaggcc 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 366 acttggagagtgagtgagttccggaacgtgctgctcgctgccctctgcccattagaggcc 307
Query: 241 acaactgaaggagggtaggcccttccagcagctccatcttgctcataggatctgctcgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acaactgaaggagggtaggcccttccagcagctccatcttgctcataggatctgctcgtg 247
Query: 301 aacaaacttcctctgcctctaatgtcacccctgctttcgtaagaacatttaataattatc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aacaaacttcctctgcctctgatgtcacccctgctttcgtaagaacatttaataattatc 187
Query: 361 ttaaaatttctaattatattgttaatatgcttaagatgaaaaactttgagttgttttgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttaaaatttctaattatattgttaatatgcttaagatgaaaaactttgagttgttttgaa 127
Query: 421 aatgtaagttagaatattgaatcgtgccaggcctggtggtgcagttctttcatgaaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aatgtaagttagaatattgaatcgtgccaggcctggtggtgcagttctttcatgaaatct 67
Query: 481 ttagggaggt 490
||||||||||
Sbjct: 66 ttagggaggt 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
