BAC Information

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BAC

Clone NameMSMg01-081M06
Chromosome1 (Build37)
Map Location 100,199,053 - 100,199,518
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081M06.T7 (MSMg01no081_m06.b1)MSMg01-081M06.TJ (MSMg01no081_m06.g1)
ACCAG302292AG302293
length701692
length of high quality
(start - end)
470 (41 - 510)514 (65 - 578)
definitionCHROMAT_FILE: MSMg01no081_m06.b1 PHD_FILE: MSMg01no081_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:04 2005CHROMAT_FILE: MSMg01no081_m06.g1 PHD_FILE: MSMg01no081_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAATGTTCTCTATAGTTCGGTGTTAAATTTTGATCAATACTAGCAAAGAA
TGTTAGCAAGGATCTCAGTTAGCATGTCTCTTTGAGAAATTCTCTGAATT
ATTAGGGAACAAATCAAAGATGAAATGTCAAAACAGTATAGACTTGTCTC
TGTTCCTCATGTGTTCTTCCCTATTAGTCTTAGCACCTTGAACAGTAACT
AGGAGGTATTTAACAAATGAAGAGTCTAGGACAATATACTTCAGTTAGCA
GATGGTTTTCACCTTTTGAAGCAATTACCTGTAGACTTTGTTTTTTCTAA
ACCTACTTTATTTAGGGTTCTTGAATGCTTCAACCTCCCGTTTAGCCCAC
TAACCAGAGGTAAGGGAAAAAGAAGGTTTAGGTTAAGGGGGTTGTGGGAC
TCTTTAGAATTAGTTCTGTGAAGTTTTTTGGCACATTTCTCTCTATGAAG
TGAAGACCATCAAAGGCCAGCAAAGTATTGCACAGCTAGTGAAGACCATC
AAGGATCAGTGAAGTACTGCACAGTGTAGTATGGTAAGAGCGCCCTCTCA
CTGTTTATGAGATCCCATTTACACTCATTCCTTACATCATATGTCCTTTC
AAGTGTCTACTCCCGCATAGCATCGCATTCTCTCTCATGCGTGTGCTTTT
A
CAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTCCTGGACTGGACCTTTTTGAAGGACCATCGTG
GTCTGTGCTGCTGAGTGGGTCAGTGGTCCTGAGGTGGTCAGGACCAGGTT
GATGTCTAGGGTCCGTGCTGCACCCTGAAGCCAGGTCGATGTCTGTGGGT
CATGCTACCACTCGAGGCCATAATTTCTGAGTGGCCTGTGATGCTATCTG
AGGATGTGGTGGGACTGGGGCCCTTGCCACTACTGAGGGCCATGACTGGG
TCTGAGGTCTTACAGCAGCCGGAGTCTATGTTGGTGTCTGGTGGCCTGTG
TTACCACTGGAGGTTGTTGGTATGCCCCTGGCCTATGCCGCTGAGCCATG
TTGATTTTGTGGGCTGTGCTGCCCACAGGCTGCTGCAGAGGGGTCATGAC
TGGGCTGAGGTCCTTCTGCAGCTGGGGTCTGTGATGATGTCTGTGGCCCA
TGTTACCACCAAGGCTATGTCTGTGATCTAAGCTGTAGCCTGAAGCCATG
TTGATGTGAGTAGCCTGCACTGCCACCTGAGACTAGATTTGATATCTGTG
GTTGGAACTCCCTTCAAGGGCCTTGTCTGGCTTCCAGGCTGTCTCTACTG
CCATGGTCCAGGGGCCCTGTTTGTGCTGAGAGCTGTTATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_m06.b1 MSMg01no081_m06.b1 CHROMAT_FILE:
MSMg01no081_m06.b1 PHD_FILE: MSMg01no081_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:04 2005
         (470 letters)



>mm_chr1_100199030_100199899
          Length = 870

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%), Gaps = 1/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaatgttctctatagttcggtgttaaattttgatcaatactagcaaagaatgtt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaattctaatgttttctatagttcggtgttaaattttgatcaatactagcaaagaatgtt 430

                                                                       
Query: 65  agcaaggatctcagttagcatgtctctttgagaaattctctgaattattagggaacaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agcaaggatctcagttagcatgtctctttgagaaattctctgaattattagggaacaaat 370

                                                                       
Query: 125 caaagatgaaatgtcaaaacagtatagacttgtctctgttcctcatgtgttcttccctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caaagatgaaatgtcaaaacagtatagacttgtctctgttcctcatgtgttcttccctat 310

                                                                       
Query: 185 tagtcttagcaccttgaacagtaactaggaggtatttaacaaatgaagagtctaggacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 309 tagtcttagcaccttgaacagtaactaggaggtatttaacaaatgaaaagtctaggacaa 250

                                                                       
Query: 245 tatacttcagttagcagatggttttcaccttttgaagcaattacctgtagactttgtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tatacttcagttagcagatggttttcaccttttgaagcaattacctgtagactttgtttt 190

                                                                       
Query: 305 ttctaaacctactttatttagggttcttgaatgcttcaacctcccgtttagcccactaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttctaaacctactttatttagggttcttgaatgcttcaacctcccgtttagcccactaac 130

                                                                       
Query: 365 cagaggtaagggaaaaagaaggtttaggttaagggggttgtgggactctttagaattagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cagaggtaagggaaaaagaaggtttaggttaagggggttgtgggactctttagaattagt 70

                                                         
Query: 425 tctgtgaag-ttttttggcacatttctctctatgaagtgaagacca 469
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 69  tctgtgaagtttttttggcacatttctctctatgaagtgaagacca 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)