BAC Information

Click to search

BAC

Clone NameMSMg01-082E05
Chromosome1 (Build37)
Map Location 60,280,660 - 60,281,027
singlet/doubletsinglet
Overlap geneNbeal1
Upstream geneAls2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082E05.T7 (MSMg01no082_e05.b1)MSMg01-082E05.TJ (MSMg01no082_e05.g1)
ACCAG302673AG302674
length677672
length of high quality
(start - end)
101 (114 - 214)368 (72 - 439)
definitionCHROMAT_FILE: MSMg01no082_e05.b1 PHD_FILE: MSMg01no082_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:42 2005CHROMAT_FILE: MSMg01no082_e05.g1 PHD_FILE: MSMg01no082_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCGGATAGTCAGAGCTGTATAGAGAAACCCTGTCTCAAAAAA
CAAAACAAAAACAAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA
AGGAAGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAA
AGAAAAAGAAAAAAATGTTCTCACTGAATGAGATTCTGAATGCAAAGGCA
TGGTTTAGCAGGCATATTTTGCATATACTTTTCTTCTTATGAATGTATGA
GTTTTAGGGTTGGAGAGATGGTTCAGTGGTTAAGAGCACCAATTGCTCTT
CCAGAGGTTCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCACAGCCA
TCTGTAATGGTATTTGGTGCCCTCTTCTGGTATCCTCTGAAGATTGTTAC
AGCGTACCCATAAATACAATAAATCAATCTTAAAACAAAACACCGTTGTG
AGTTTTATATAATATTAACTCCATTTCACATTTAATAGATTCTTCTATAA
TTCTGCGCCACATCTTTTAATTGTTTAAAGAATCCATCCCATGCTACCTT
ACTGTTTTTCTTTCCTACCCCTCCACAATTCCACTTGCATTTAATCGACA
CCCTACTTCCACCACCCTTGATTTCTA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATCTAACAGAGGATCAAACTGATTTTTA
AACTTACAACTTACAGTAACTACAGAAAATAACATGAACTAAAAACTATA
CAATTTTAAATTTTCTATATAAACATATAATTTACCTCTTCAATAATATT
TTATGCACATTTCTAAATTAATATATGTACATATGAATTTATACACCAGT
TCATTACTGTTTCTTATAGCTGAGTGGTGAGATATAAAAAGTTTTGCTCT
CAGCTGGGTGGTGGTGAACAACTTTAGTCCCACCACTTGGGAGGCAAGGC
CAGCCTGGTTATCAGAGTTCCAGGACAGCCAAGGCTACACAGAAAAACCA
TCTCAAAAAACCAAACCAACCAAACAAACAAACAAACAAAAGAAAACAAG
AAGAAAACCAAACCTTTTATTCTCATTTTTCTTACTAAGTCTCCTAGTTT
AGCATAATTACAATATATACCACTGTATTGAATTCAGTTCTTTAACAATC
TAACACAAGTAATACAACATGAATCATATGAAGTATTGATCACAATTTAC
AACATACTGAACTGCCATCATGGTTTCCATCAGTGACCTTTTTAAATGCA
GTGTGCTCAGGATTCTATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_e05.g1 MSMg01no082_e05.g1 CHROMAT_FILE:
MSMg01no082_e05.g1 PHD_FILE: MSMg01no082_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:42 2005
         (368 letters)



>mm_chr1_60280598_60281365
          Length = 768

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctaacagaggatcaaactgatttttaaacttacaacttacagtaactacagaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tatctaacagaggatcaaactgatttttaaacttacaacttacagtaactacagaaaata 371

                                                                       
Query: 61  acatgaactaaaaactatacaattttaaattttctatataaacatataatttacctcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acatgaactaaaaactatacaattttaaattttctatataaacatataatttacctcttc 311

                                                                       
Query: 121 aataatattttatgcacatttctaaattaatatatgtacatatgaatttatacaccagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aataatattttatgcacatttctaaattaatatatgtacatatgaatttatacaccagtt 251

                                                                       
Query: 181 cattactgtttcttatagctgagtggtgagatataaaaagttttgctctcagctgggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cattactgtttcttatagctgagtggtgagatataaaaagttttgctctcagctgggtgg 191

                                                                       
Query: 241 tggtgaacaactttagtcccaccacttgggaggcaaggccagcctggttatcagagttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tggtgaacaactttagtcccaccacttgggaggcaaggccagcctggttatcagagttcc 131

                                                                       
Query: 301 aggacagccaaggctacacagaaaaaccatctcaaaaaaccaaaccaaccaaacaaacaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 130 aggacagccaaggctacacagaaaaaccatctcaaaaaaccaaaccaaccaaccaaacaa 71

                   
Query: 361 acaaacaa 368
           ||||||||
Sbjct: 70  acaaacaa 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)