BAC Information

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BAC

Clone NameMSMg01-082F10
Chromosome1 (Build37)
Map Location 100,061,917 - 100,062,029
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082F10.T7 (MSMg01no082_f10.b1)MSMg01-082F10.TJ (MSMg01no082_f10.g1)
ACCAG302731AG302732
length725747
length of high quality
(start - end)
---113 (63 - 175)
definitionCHROMAT_FILE: MSMg01no082_f10.b1 PHD_FILE: MSMg01no082_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:47 2005CHROMAT_FILE: MSMg01no082_f10.g1 PHD_FILE: MSMg01no082_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAATGTTTCCTATAGTTCGGTGTTAAATTTTGATCAATACTAGCAAAGAA
TGTTAGCAAGGATCTCAGTTAGCATGTCTCTTTGAGAAATTCTCTGAATT
ATTAGGGAACAAATCAAAGACGAAATGTCATAACAGTATAGTACTTGTCT
CTGTTCCTCATGTGTTCTTCCCTATTAGTCTTAGCACCTTGAACAGTAAC
TAGGAGGAATTTAACAAATGAAGAGTCTAGGACAATATACTTCAGTTAGC
AGATGGTTTTCATCCTTTTGATGCAATTACCTGTAGACTTTGTTTTTTCT
AAACCTACTTTATTTAAGATTCTTGAATGCTTCAAACTCCCGTGTAGCCC
ACTAACCTGAGCCTCATGGTAAATTAAGGATTAGGTAAAGGGGGTTGTGC
GACTCATTATAATTATTTCTTGTTCTTTATTAAAGATACATATCTCTTTC
AGATATGTCGAATAATTATGGTCATGTACCTTTTTGTACACTCTATTGAC
ATATATCTACAAACCCTAATAAGCGTTTGTACAGTTGTATAAAATTATAC
ATTGATATTCAACGTTGTTTATGATACGTTCATCTGACCCTTTTTCTTTA
TCACTACTTTTGCTTATATTTAGCGGACCTCCCTACACTCCGTTGTCTCT
TATTCCTCCCTTTTTCACGTTTTTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TGCCCGCGGAATCATTTCCTGGACTGGACCTTTTTGAAGGACCATCGTGG
TCTGTGCTGCTGAGTGGGTCAGTGGTCCTGAGGTGGTCAGGACCAGGTTG
ATGTCTAGGGTCCGTGCTGCACCCTTGAAGCCAGGTTCGATTGTCTAGTA
GATGTCAATGCTACCACTTCTAGGCCATAATTTCCTGATTGGCACTGTTG
ATGCTTATCTGAGGTATGTGTGTGTTAATTGGGGCCCCATTTGCTACTAC
TTGAAGAGACAATGAAATAGGACTCTTGTATGTTCTTTAACGAATGCCTT
GTATCTTTTATTTTTGTTGCCTTGTTAGCTATTGTTTTTACCAATTCGAA
GTCTGTGTTCTTAATTATTCCCCCGGTTCCCTTTTACCCTTTATATATCT
TTTCTCCCATTCATTTTTTTGTTCTTTTTTTTTACTTTCTCCCTCTTCTT
TTTTTTGTTTGTTTATTAAATCATCTTTTTCTTATACACTAATTATACCT
ACCTCTCAATTTCATATTATCCCTATGCTCACTCTCTAGTTTTTACTACT
TCGTCTTCATTATATTACCTTATCTCTTCCTATTATTCTTTTCTACCTTT
CTTTTCTTACCCGTCCCATGCTACTACTATCTTACTTCATTATTTCTTCT
TATACTCCATTCTTATTATTTATTATCCTCTTTTTCCTTCGCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_f10.g1 MSMg01no082_f10.g1 CHROMAT_FILE:
MSMg01no082_f10.g1 PHD_FILE: MSMg01no082_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:47 2005
         (113 letters)



>mm_chr1_100061717_100062229
          Length = 513

 Score =  219 bits (113), Expect = 6e-62
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcctggactggacctttttgaaggaccatcgtggtctgtgctgctgagtgggtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcctggactggacctttttgaaggaccatcgtggtctgtgctgctgagtgggtcag 260

                                                                
Query: 61  tggtcctgaggtggtcaggaccaggttgatgtctagggtccgtgctgcaccct 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcctgaggtggtcaggaccaggttgatgtctagggtccgtgctgcaccct 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)