BAC Information

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BAC

Clone NameMSMg01-082H09
Chromosome1 (Build37)
Map Location 174,340,936 - 174,524,930
singlet/doubletdoublet
Overlap geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8
Upstream geneUsf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Downstream geneFcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082H09.T7 (MSMg01no082_h09.b1)MSMg01-082H09.TJ (MSMg01no082_h09.g1)
ACCAG302823AG302824
length680680
length of high quality
(start - end)
255 (67 - 321)243 (69 - 311)
definitionCHROMAT_FILE: MSMg01no082_h09.b1 PHD_FILE: MSMg01no082_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:55 2005CHROMAT_FILE: MSMg01no082_h09.g1 PHD_FILE: MSMg01no082_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,340,936 - 174,341,190)(174,524,688 - 174,524,930)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGG
AATTCCATCCCTCCGCCATAAACTCTAATCACAGGAGAATATATAGATTC
TGGAAACAACAAGCCAAGGGTAAGTTAGTTGATTGGATCTTTGATTTTCT
GGCTATTTTGAAGATTTCCATACAGAGAGGCTATCAAGAACCACGGGCCC
CAACACTTTTTTACAAAGTGACCAAGACTTCCCTGTGGTCCTAGAGACCG
CTATTGCTGCTTCTACCGGCAGGGGGTGCAGCAAGTGTTTCCCTTTCAAG
ATACAAGGGCCACATTGATTATTCATGTGGCCTAGGGACCAAAGACTTCC
TAGGGGAATCATGAAATAATTTTAAGTAAAAATAAGTGTAATAACGAATA
TGCAACCAGGATTTCAGCCTAGATTACATTTGCTTTTATATGAACACATA
ACTGAATTATAATAATAGCTTTTGCTACAGGAGGAAGGAAAACACAAATA
ACCTAAGTGTCTCCGGCCCATGAGCAGAATAACTACCCCCAAATTGTACC
TCCAAACTCAGAGCTCCACCTTTACTGTATACGGCCGGGGAATCAGATAC
TGTGGTTAGGGGCGATATTCTTTTCTTCTCCTGAGGTTGATACTCTTCTA
TATGCTGGGCTCTTGGAGGCTGTAAGGAGG
CAATACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCGCGAAATTCCATGTCTGCATTGGGGACATTGGCTGCA
GCAGCCTGGAATTGCCCCTTAATGGAAGGAGAAACAAACACACAATTGGG
AGCCCTGTGGCTGCCCTCTGCTGGCCTTCTCTGGTACTCAAGAATTTATG
TGCTGGCTACACTCAGGCTAGTCCATTCACAGGAGACCTACATCTTAAAA
GATGGAGATTGGGAGTGCAGTTCAATTGGTAGAGTACTTGCTAGGCATGA
TAAAAACCCTGGAAGTATCTTTCAAACCCAGTGGGTGGTGAGTACCTGAG
GTCTCAGCATGCATGCCGTGTAGACAGGAGGATCAGAAATTCAATGTCAT
CTTCAGCTACAGAACAAGTTTCCAGGACATTCCAGGCTGTATGGGATCCT
GCATTGATAATTTTGGTCTCTTATATAAAAAAAAAAAAAAAGTCATGTTA
TGTGAAATATGTTTTTTGTTTAATCCCAGGTTCAAAATAACAGGCTGCTT
CACAGTGACTGTGACCTGCCTCCTGTTCTATTAAGGCTATGATTTTTTGC
CTGTTTGTAAATCATTTAACTTGGGCCACTCCGCATATGCCATCTATGGC
AGATCTCATACCGTTACACGGGTACTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_h09.b1 MSMg01no082_h09.b1 CHROMAT_FILE:
MSMg01no082_h09.b1 PHD_FILE: MSMg01no082_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:55 2005
         (255 letters)



>mm_chr1_174340736_174341390
          Length = 655

 Score =  493 bits (255), Expect = e-144
 Identities = 255/255 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaactctaatcacaggagaatatatagattctggaaacaacaagccaagggtaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaactctaatcacaggagaatatatagattctggaaacaacaagccaagggtaagtt 260

                                                                       
Query: 61  agttgattggatctttgattttctggctattttgaagatttccatacagagaggctatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgattggatctttgattttctggctattttgaagatttccatacagagaggctatca 320

                                                                       
Query: 121 agaaccacgggccccaacacttttttacaaagtgaccaagacttccctgtggtcctagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaccacgggccccaacacttttttacaaagtgaccaagacttccctgtggtcctagag 380

                                                                       
Query: 181 accgctattgctgcttctaccggcagggggtgcagcaagtgtttccctttcaagatacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accgctattgctgcttctaccggcagggggtgcagcaagtgtttccctttcaagatacaa 440

                          
Query: 241 gggccacattgatta 255
           |||||||||||||||
Sbjct: 441 gggccacattgatta 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no082_h09.g1 MSMg01no082_h09.g1 CHROMAT_FILE:
MSMg01no082_h09.g1 PHD_FILE: MSMg01no082_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:55 2005
         (243 letters)



>mm_chr1_174524488_174525130
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccatgtctgcattggggacattggctgcagcagcctggaattgccccttaatggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attccatgtctgcattggggacattggctgcagcagcctggaattgccccttaatggaag 384

                                                                       
Query: 61  gagaaacaaacacacaattgggagccctgtggctgccctctgctggccttctctggtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagaaacaaacacacaattgggagccctgtggctgccctctgctggccttctctggtact 324

                                                                       
Query: 121 caagaatttatgtgctggctacactcaggctagtccattcacaggagacctacatcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caagaatttatgtgctggctacactcaggctagtccattcacaggagacctacatcttaa 264

                                                                       
Query: 181 aagatggagattgggagtgcagttcaattggtagagtacttgctaggcatgataaaaacc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 aagatggagattgggagtgcagttcaattggtagagtacttgctaggcatgagaaaaacc 204

              
Query: 241 ctg 243
           |||
Sbjct: 203 ctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)