BAC Information

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BAC

Clone NameMSMg01-082L16
Chromosome1 (Build37)
Map Location 128,706,421 - 128,815,353
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082L16.T7 (MSMg01no082_l16.b1)MSMg01-082L16.TJ (MSMg01no082_l16.g1)
ACCAG303029AG303030
length689683
length of high quality
(start - end)
523 (44 - 566)564 (66 - 629)
definitionCHROMAT_FILE: MSMg01no082_l16.b1 PHD_FILE: MSMg01no082_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:16 2005CHROMAT_FILE: MSMg01no082_l16.g1 PHD_FILE: MSMg01no082_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,814,835 - 128,815,353)(128,706,421 - 128,706,984)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAGAAGACTCAGGTCTGCCTTACTTACTTTAAACTCCCAATGCTAA
CAGTGTCCTGACACATAGAAGAAAAATGCCAGTAAATGTCACCAGAATGA
AAGTGACAAATGTAGCGTGAGTCTATTTGGTGTTAGGAGTAGCAAGGAGT
AGCAAGCATCTATCTTCTGTTCCTTCCATCAATCTCTTCTGGCCATAATC
TCCCTGAAGTAGAAACAAGGCTTCTTCTCCAACCTGTGTATCCTTTAACA
CAGTGCTCGCTTTAGCTCGGCATCGCCCCGCACTGCACACTAGACAGCTG
AATTCACAAGGAAGAGAAGATTTTTAAATCCAAAGCCTCTTGCTTAGGCT
GACACAGACCTGAGCTCTTGACCTGCTCGATTCTACTTCAGAGCCAGCGG
ATTTGGAACCAAGGGGAGCCACAATTCTGTATTTCGCCTTAGCTGTTTTG
CAGTCAGGTATGCTGGCTTAGTGCTGCCTCATTTTCTCCTCGCTTTCTTT
TTCTTTCTCACTGAAGCATCTTGTATCATAGATGCTCACTCGTTGCAGAG
GCTCAGCATGGCGGGGGAATATAGCCTCCCAGAATACTGTCCAAGAACTA
ACAGCCTGTGATCCCGGGGATGAGAGCACAAAAATGCTN
TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAAGATTGGGTAGCACAGCTATGCACCCTCGAGG
AAAACAAAACGCTTCTCAACTTTGATGGAGCAGCATCCCAATAAGCTATT
TACAGCCATGACTGTGGTTTCCTCTCACATAGCAGCAGGTAGTCTTTGTT
CTCTGTGACTACATGGTTGAAGCTGAGGCTGGGGCTGCTGGTAAGCTGGC
CTCCCTGAAAGCATCCCACTGCCTGCTGATAGCCCAGGAAGATAGCCACT
CTCAGACAACCAGGTTTACTAAGTGCCTATCACTTTCACACCTTAGGAAA
GCAAAAGCATTTAAGTTGAACTATTCATAGGCCGGGCTATTGTGTTACAT
TTCTCAAGGAGATGAACAAATGGCTTTTTATTCCAGATACTTCACCAAGA
ACAAACGAAAGGAAAAATTCCACTGGAGTCTAGCTTATGAACCAATGAGT
TGATTGGTGTTATTCACATGAGCATGGGCAAGGGATTACCTGTAAGACTG
TGGGCAATATGTGAGTGGCTAAGCTATTGAAGAAAATTATTCTATCAGGA
ACTAATAGCTGCTTAGAAATACTTAGAGAGTATTCTCAATGATGGAAACT
TAATGTGACCAATCTTGTGCAGGTCTCTTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_l16.b1 MSMg01no082_l16.b1 CHROMAT_FILE:
MSMg01no082_l16.b1 PHD_FILE: MSMg01no082_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:16 2005
         (523 letters)



>mm_chr1_128814527_128815449
          Length = 923

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagaagactcaggtctgccttacttactttaaactcccaatgctaacagtgtc 64
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 827 gaattcttagaagactgaggtctgccttacttactttagactcccaatgctaacagtgtc 768

                                                                       
Query: 65  ctgacacatagaagaaaaatgccagtaaatgtcaccagaatgaaagtgacaaatgtagcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctgacacatagaagaaaaatgccagtaaatgtcaccagaatgaaagtgacaaatgtagcg 708

                                                                       
Query: 125 tgagtctatttggtgttaggagtagcaaggagtagcaagcatctatcttctgttccttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgagtctatttggtgttaggagtagcaaggagtagcaagcatctatcttctgttccttcc 648

                                                                       
Query: 185 atcaatctcttctggccataatctccctgaagtagaaacaaggcttcttctccaacctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atcaatctcttctggccataatctccctgaagtagaaacaaggcttcttctccaacctgt 588

                                                                       
Query: 245 gtatcctttaacacagtgctcgctttagctcggcatcgccccgcactgcacactagacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtatcctttaacacagtgctcgctttagctcggcatcgccccgcactgcacactagacag 528

                                                                       
Query: 305 ctgaattcacaaggaagagaagatttttaaatccaaagcctcttgcttaggctgacacag 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 527 ctgaattcacaaggaagagaagatttttaaatccaaagcctcttgcttaggctgacacgg 468

                                                                       
Query: 365 acctgagctcttgacctgctcgattctacttcagagccagcggatttggaaccaagggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acctgagctcttgacctgctcgattctacttcagagccagcggatttggaaccaagggga 408

                                                                       
Query: 425 gccacaattctgtatttcgccttagctgttttgcagtcaggtatgctggcttagtgctgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gccacaattctgtatttcgccttagctgttttgcagtcaggtatgctggcttagtgctgc 348

                                                  
Query: 485 ctcattttctcctcgctttctttttctttctcactgaag 523
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctcattttctcctcgctttctttttctttctcactgaag 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no082_l16.g1 MSMg01no082_l16.g1 CHROMAT_FILE:
MSMg01no082_l16.g1 PHD_FILE: MSMg01no082_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:16 2005
         (564 letters)



>mm_chr1_128706221_128707184
          Length = 964

 Score = 1036 bits (536), Expect = 0.0
 Identities = 557/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagattgggtagcacagctatgcaccctcgaggaaaacaaaacgcttctcaactttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagattgggtagcacagctatgcaccctcgaggaaaacaaaacgcttctcaactttga 260

                                                                       
Query: 61  tggagcagcatcccaataagctatttacagccatgactgtggtttcctctcacatagcag 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tggagcagcatcccaataagctatttacagtcatgactgtggtttcctctcacatagcag 320

                                                                       
Query: 121 caggtagtctttgttctctgtgactacatggttgaagctgaggctggggctgctggtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtagtctttgttctctgtgactacatggttgaagctgaggctggggctgctggtaag 380

                                                                       
Query: 181 ctggcctccctgaaagcatcccactgcctgctgatagcccaggaagatagccactctcag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ctggcctccctgaaagcatcccactgcctgctgatggcccaggaagatagccactctcag 440

                                                                       
Query: 241 acaaccaggtttactaagtgcctatcactttcacaccttaggaaagcaaaagcatttaag 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 acaaccaggtttactaagtgcctatcactttcataccttaggaaagcaaaagcatttaag 500

                                                                       
Query: 301 ttgaactattcataggccgggctattgtgttacatttctcaaggagatgaacaaatggct 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaactatttataggccgggctattgtgttacatttctcaaggagatgaacaaatggct 560

                                                                       
Query: 361 ttttattccagatacttcaccaagaacaaacgaaaggaaaaattccactggagtctagct 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 ttttattccagatacttcaccaagaacagacgaaaggaaaaattccactggagtctagct 620

                                                                       
Query: 421 tatgaaccaatgagttgattggtgttattcacatgagcatgggcaagggattacctgtaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 tatgaaccaatgagttgattggtgttattcacatgagcatgggcaagggattgcctgtaa 680

                                                                       
Query: 481 gactgtgggcaatatgtgagtggctaagctattgaagaaaattattctatcaggaactaa 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 gactgtgggcaatatgtgagtggctaagctattgaagaaaagtattctatcaggaactaa 740

                                   
Query: 541 tagctgcttagaaatacttagaga 564
           ||||||||||||||||||||||||
Sbjct: 741 tagctgcttagaaatacttagaga 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)