BAC Information

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BAC

Clone NameMSMg01-083H14
Chromosome1 (Build37)
Map Location 112,393,509 - 112,393,929
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7, LOC100041429
Downstream geneEG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083H14.T7 (MSMg01no083_h14.b1)MSMg01-083H14.TJ (MSMg01no083_h14.g1)
ACCAG303586AG303587
length737728
length of high quality
(start - end)
207 (70 - 276)424 (72 - 495)
definitionCHROMAT_FILE: MSMg01no083_h14.b1 PHD_FILE: MSMg01no083_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:12 2005CHROMAT_FILE: MSMg01no083_h14.g1 PHD_FILE: MSMg01no083_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXCTATTGCGTACGTAGTCCGCGGAAT
TCATTCATTTCCCTCTCTATGTAATTTGATGCAATTGACTTGCTATATAT
TGCATTTATTGTGTTTATCTCTGTGTCTTGTATCACTAATTTCTCCAAGA
CATTTTTTTTAATCAAGTAGTGTTAGATTTCGTCTAAGACTCTTTCAGCA
CCTAATAAAATGATTGTGCTTTTTCTTAAGATTTTATGTGATGAATTCCT
TTGATGAATTTCTAGATGCTGAACCAATCCTACATTATTGGTAAGAAGCC
GCCTTGATAGATGTATATTTTATGTTGTTTGATTTACTCTCCATAGGTTT
TATTGATTTATATTTTTACCCACGCTCCCACCACAACATGATCTGATTCT
TGTACAGTTTGTAAATTACGCTTGTAGTAACTTAGAAGTGATATGTTATT
GAGAGGCGTTGATGCTATTTGGATGTCATGTAGGTGGGATTATCCGTCAT
GTCTGGGGGGTGGGGGTTGATAGTCGGGTGGGTGGGGCAGGATATCTGTT
GGTGGTGTGGCGGGGTGGTGGTGCTCGCGGAGCGGTTTTGTGTGGATCAA
GGTCGGTGTGATGGAAGGGAGGGTGGATGGGGGTCAAGAGGGGGTGGTAG
GGAAACCGAGAGGTGCTGTTGGGCTGTGGACGAATGTCCGTCGCTTGCTT
GATACGTCGTTTGGTGGATGTGGGTGGCGATTGTGGN
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATCAATGAGACATTTTCTATTTATGAAT
TAAATATGTTATAGATATTTAATATTTAATAAGATAAGTAAATATTTAAT
GGGTCCTTTAAAGCAATGAAGCATTACCATTATTCTAGAAACTATCTTCA
TATTTTAATTATTTAAAAATACATCTTTGTTCATGCACATCTTAATAAAA
TTTTTGTGTTTTCAAAGTGACAATCAACACAAAGACCAGTAGTGAAGTAA
ATATTCTAAGGGTAATTGAATCTTGAAAGCTTTAAACATTATGATTTGAT
ATCTCCCGTTGAAAACTGAGGCTATTGTAATTTCAGTGACCTGAGTCAGC
TCAGTTTGATATCAGAACATTAACATATATTAGCTAAGGAGTGAACATCA
TATTGCTCCTCTTATTAAAATATGCTTATATCTCCATTAAAATAGAAAGC
ATTACAAAACATTAAAGTAAAACTTACTCGATACTATACTTAATATATTT
ATGCTGAAAATAATCAGTGTATATCATTTTACAAGTGAATACTTATGTTA
TTTGACTGCCCGGATCTGTTTTTGCCCCCTCTATATGATTTTTTTCTAGT
TGATTGAAATTTTCATAATTTCTTGATTCTACTTTTTTTGTTCCTATTCT
TGTTTTTTCTTTCTCACTGCTCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_h14.g1 MSMg01no083_h14.g1 CHROMAT_FILE:
MSMg01no083_h14.g1 PHD_FILE: MSMg01no083_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:12 2005
         (424 letters)



>mm_chr1_112393307_112394130
          Length = 824

 Score =  768 bits (397), Expect = 0.0
 Identities = 416/423 (98%), Gaps = 2/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcaatgagacattttctatttatgaattaaatatgttatagatatttaatatttaata 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 203 tatcaatgagacattttctatttatgaattaaat--gttatagatatttaatatttaata 260

                                                                       
Query: 61  agataagtaaatatttaatgggtcctttaaagcaatgaagcattaccattattctagaaa 120
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 261 agataagtaaatatttaatgggtcctttaaagcaatgaagcagtactattattctagaaa 320

                                                                       
Query: 121 ctatcttcatattttaattatttaaaaatacatctttgttcatgcacatcttaataaaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ctatcttcatattttaattatttaaaaatacatctttgttcatgcacatcgtaataaaat 380

                                                                       
Query: 181 ttttgtgttttcaaagtgacaatcaacacaaagaccagtagtgaagtaaatattctaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgtgttttcaaagtgacaatcaacacaaagaccagtagtgaagtaaatattctaagg 440

                                                                       
Query: 241 gtaattgaatcttgaaagctttaaacattatgatttgatatctcccgttgaaaactgagg 300
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 441 gtaattgaatcttgaaagctttaaacattatgatttgatatcttccattgaaaactgagg 500

                                                                       
Query: 301 ctattgtaatttcagtgacctgagtcagctcagtttgatatcagaacattaacatatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctattgtaatttcagtgacctgagtcagctcagtttgatatcagaacattaacatatatt 560

                                                                       
Query: 361 agctaaggagtgaacatcatattgctcctcttattaaaatatgcttatatctccattaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctaaggagtgaacatcatattgctcctcttattaaaatatgcttatatctccattaaa 620

              
Query: 421 ata 423
           |||
Sbjct: 621 ata 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)