CATAATTTGCGGCGCTATACGACTCCTATATCGAGAGATCCGCGGAATTC
ATATTCACACGATACTCTCACTTAAATCTTATTAAGAATATTTGATGAAA
TATATTTGTCTGTGATACATTACAGACTTATATTTCTGTCTTTTCTATAA
CACAACGATGTTGCTGAATAAAATGACACTAATCTAGATTTTAATTCATT
TTTCTTGGCTTATAAAGTTAAATCATTGTGTTACATTAAATTGTCCATTT
AAATAATTAATCCTAAAATTGCGTGAAGCAAATCTATTTGTTTCCTTGCA
GTTATTATATTTTTAACATATGATAGCTTGGAAAAGGGTATTATTTTTAA
TCTATAATAGTTCTGGGTAACAAAATTAGGATTACATACAAAATGAGCAC
AACTTGAGAAAAGACTTGTTGATCCACACCAATAAGCAACTGCATTTGCT
TTCATGTTTTAGCCTTTTGAAATGAATTTTGGAATTCAGTCACATTTTTC
AATCTTTCTTATTCCAAGAATCATTGTAGAAAAGAGAGGTTTACAGATGG
TTGATTTTTGAAGTTTAAGAAAATCCATGAAACGGTATTGCATGTTATAA
ATGTGTGAAAACACAAGAAAGCCTTCAGTGGATTTTTTCATTTTTGGTCC
CTCTTAAGAAAAAAAATGGAGAAGTCTCAAAACAATTTCCAGCTTAAAAA
GGCTTGCAACAGAATGAAT

TTTTTTGGTTGTTGTTGGTGGGTGGTTGTGTCTCTACTGTTGGGGGGGGC
GGCCCCCCGGTCCGCTACGTGGAGTGGTGGGGCGGGTGGAGTGCTGTGTG
GGTGGGACGGCATAGCGACAGGGGTCCAAGGGCGAGAGTGGGGAGGGGGA
GGGAGTGGGACGGGGGTCGTGGGGGTGGGTGGAGAGAGAGCCGGGATGGA
TAGAGCAAAAGTAATAGAAACCGAGTCTTGCTCGCTCGCAACGGACATAA
TAGAAGATGGGAACTAGGGTATTATGCTCGGTGAGGGCGGGTGATGGTGT
GCGTTTGCTAGTGCTGCTGGGGGACGGCAGCGGGTGGGAGGGAGAGATAT
GCGTGAGGCGGAATTTGTGTGTCGTGGTGGGTTGTGCGGGTTTGGGGGTA
TGAGGGAGCACGGAGCGTGTGCGCCGGTGGCGTATGTGCGGCAGGGTTTG
GGGACGGCTGGTAGTTGTGAGGGTGGTGGGGTTGGTGCGTGGCGCTTGGT
GGGTAGGTGGATTGGGCGCGAGCTTTGGTTGGTGTTGGTGTGTTCGGGGG
TTGGCTGGTCAGACGGGGGTGGTCGGGGGACAGACTTATGAGAAAGGTGG
ATGCGAGTTGTCTTGGTTCTGGGTGATCGCAGGGGTATGGCGGAAGTGGG
GGTGCCGGGGGGATGCGGGGGATAGATGCGCTGGGATACGTGGAGAGGGC
GTGTGCGTCGGGGTGCGCGGCGTGTGTATGTGCCGTGGTTGATGTGGATC
GGAGTGTTGGTGGGGTCGTCGGAGGTCTGAGCGTGTGGGGGGTGGAGTGT
TGGTGGTGTGGTGCTGGTGCGTGAGGGTGGGCG

Query= MSMg01no083_p12.b1 MSMg01no083_p12.b1 CHROMAT_FILE:
MSMg01no083_p12.b1 PHD_FILE: MSMg01no083_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:51 2005
         (495 letters)



>mm_chr1_29398868_29399758
          Length = 891

 Score =  868 bits (449), Expect = 0.0
 Identities = 473/483 (97%), Gaps = 6/483 (1%)
 Strand = Plus / Plus

                                                                       
Query: 14  atattcacacgatactctcactt-aaatcttattaagaatatttgatgaaatatatttgt 72
           ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 214 atattcaca-gatactctcacttaaaatcttattaagaatatttgatgaaatatatttat 272

                                                                       
Query: 73  ctgtgatacattacagacttatatttctgtcttttctataacacaacgatgttgctgaat 132
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 273 ctgtgatacattacagacttatatttct----tttctataacacaacgatgttgctgaat 328

                                                                       
Query: 133 aaaatgacactaatctagattttaattcatttttcttggcttataaagttaaatcattgt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaatgacactaatctagattttaattcatttttcttggcttataaagttaaatcattgt 388

                                                                       
Query: 193 gttacattaaattgtccatttaaataattaatcctaaaattgcgtgaagcaaatctattt 252
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 389 gttacattaaattgtccatttaaataattaattctaaaattgcgtgaagcaaatctattt 448

                                                                       
Query: 253 gtttccttgcagttattatatttttaacatatgatagcttggaaaagggtattattttta 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtttccttgcagttattatatttttaacatatgatagcttggaaaagggtattattttta 508

                                                                       
Query: 313 atctataatagttctgggtaacaaaattaggattacatacaaaatgagcacaacttgaga 372
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 509 atctataatagttctgggtaacaaaattaggatgacatacaaaatgagcacaacttgaga 568

                                                                       
Query: 373 aaagacttgttgatccacaccaataagcaactgcatttgctttcatgttttagccttttg 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaagacttgttgatccacaccaataagcaactgcatttgctttcatgttttagccttttg 628

                                                                       
Query: 433 aaatgaattttggaattcagtcacatttttcaatctttcttattccaagaatcattgtag 492
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 629 aaatgaattttggaattcagtcacatttttcaatttttcttattccaagaatcattgtag 688

              
Query: 493 aaa 495
           |||
Sbjct: 689 aaa 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 891
Length adjustment: 10
Effective length of query: 485
Effective length of database: 881
Effective search space:   427285
Effective search space used:   427285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)