BAC Information

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BAC

Clone NameMSMg01-084D17
Chromosome1 (Build37)
Map Location 177,308,786 - 177,309,018
singlet/doubletsinglet
Overlap geneRgs7
Upstream geneOlfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D17.T7 (MSMg01no084_d17.b1)MSMg01-084D17.TJ (MSMg01no084_d17.g1)
ACCAG304146AG304147
length740716
length of high quality
(start - end)
252 (35 - 286)539 (65 - 603)
definitionCHROMAT_FILE: MSMg01no084_d17.b1 PHD_FILE: MSMg01no084_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:12 2005CHROMAT_FILE: MSMg01no084_d17.g1 PHD_FILE: MSMg01no084_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCAAT
ACTTAGTCCCGTTACAAAGATAAATTAATAAAAAAAGAACGTGCAGAACA
TTATAGAGCTGTTCAAAACATCAAATTTATGATGCATGAACATAGGAAAA
GAAGAATTTATATTAGAAGGCTAGAATATATATATATATATATATATATA
ATTTGGTTTTTCGAGACAGGGCTTCTCTGCATAGCCCTGGCTGTCCTGGA
GCTCACTCTGTAGACCAGGATGGCCTCGAACTCAGAAATCCACCTGCCTA
TGCCTCCCAAGTGCTGGGATTATAGACATGTGCCACCACTGCGAAACCAT
CCTTAATAATATAGCTGACCAGTTTTGATAAATCTAAAGAGACGGATATG
CATATACAGCCCCCTTTAGGACACCAAATACACACAACTATAGCAGAATC
TTCCAGTGCACATTACGCTTAAACACTAATGTCCAGAACTGAGAATCCCT
ATTTGAACGCTATTTCAATGATTGAATGCACGAACTAAGCCCACTCATCA
CAATCTACTTACGTTTCCCTTCCGAAATTGTCTCCAGATTATCAAGCTTC
GAATCGTTGTGTTTCCCCCGCACTCTTTTCCGCGATTCCCAACCTGTCAT
TACTTTCCACTTCCCCTGCAAACTTCCCCCTAACTCTCCACCACTCTGGT
CTCCTTTCTCGCCTCCCTCCCTTTCCCCTCATTTCCTCCN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACATGTGCAGAGGGCTCCTCAGCAGCCCAGCCGTG
GGCCCAGCAACTGTTGCTAACCCTAACCCTAACCTAGGATACCCAAGATA
TAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAA
GTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAA
GGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTA
GAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGA
CACCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCT
GTCTCTTGCGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTC
ACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGA
AAGTACCCAAGGAGCTAAAGGGATCTGTAACCCTATAGGTGGAACAACAT
TATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATC
AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG
CAAACTTTATATGCCCCAGTACAGGGGAACGCCAGTGCCCAAAAGGGGGA
GTGCCTAGTTAGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d17.b1 MSMg01no084_d17.b1 CHROMAT_FILE:
MSMg01no084_d17.b1 PHD_FILE: MSMg01no084_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:12 2005
         (252 letters)



>mm_chr1_177308679_177309329
          Length = 651

 Score =  387 bits (200), Expect = e-112
 Identities = 229/248 (92%), Gaps = 17/248 (6%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattcaatacttagtccc--gttacaaagataaattaataaaaaaagaacgtgcagaa 64
           ||||||||||||||||   |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggaattcaatacttag---ctggttacaaagataaattaataaaaaaagaacgtgcagaa 284

                                                                       
Query: 65  cattatagagctgttcaaaacatcaaatttatgatgcatgaacataggaaaagaagaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cattatagagctgttcaaaacatcaaatttatgatgcatgaacataggaaaagaagaatt 224

                                                                       
Query: 125 tatattagaaggctagaatatatatatatatatatatatataatttggtttttcgagaca 184
           |||||||||||||||||            |||||||||||||||||||||||||||||||
Sbjct: 223 tatattagaaggctaga------------atatatatatataatttggtttttcgagaca 176

                                                                       
Query: 185 gggcttctctgcatagccctggctgtcctggagctcactctgtagaccaggatggcctcg 244
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gggtttctctgtatagccctggctgtcctggagctcactctgtagaccaggatggcctcg 116

                   
Query: 245 aactcaga 252
           ||||||||
Sbjct: 115 aactcaga 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 651
Length adjustment: 9
Effective length of query: 243
Effective length of database: 642
Effective search space:   156006
Effective search space used:   156006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)