BAC Information

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BAC

Clone NameMSMg01-084G11
Chromosome1 (Build37)
Map Location 192,623,717 - 192,623,874
singlet/doubletsinglet
Overlap geneRps6kc1
Upstream genePtpn14, LOC100042438, Smyd2, Prox1, LOC100039394, EG666975
Downstream geneAngel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084G11.T7 (MSMg01no084_g11.b1)MSMg01-084G11.TJ (MSMg01no084_g11.g1)
ACCAG304269AG304270
length728732
length of high quality
(start - end)
76 (62 - 137)158 (96 - 253)
definitionCHROMAT_FILE: MSMg01no084_g11.b1 PHD_FILE: MSMg01no084_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:25 2005CHROMAT_FILE: MSMg01no084_g11.g1 PHD_FILE: MSMg01no084_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
AAATTTATCCGCCTATGACCCTGCCTCTAAAAGAATTGATAAGCTGCTTA
TCTGAATGTGTTATTATCAGTTTGCAAGTTGTGGTGTAGCAGAAAGAAGG
GGATCTGAGAGGCAGCTGGGAGGAAGATTAGGGAGGCTCTCCAAGGAGGG
GGAGGAGTCTGGGTCGGATGCACACACCCTGATTCTCTGCCCACTGTTCC
TGCTCTGTGTCATAGTTCACCTCCTCCGGCTTCAGTTTCTCTCTAACTAT
GCGCCCTGTCCTCTGCCTCTTCCACCGAGGCAAGATCCAGGAGCTTGCCT
CTTCTCTGTAGGTTCTGACATATCTAGTCTGGTCCCAGCCCTGTCTGCCT
ATGCCTGTTGAAGTCACACTTCTTTTATCGTGCGATCTTTTGTCTTATTT
ATTAAATATACTAATCCTATAATTAGTTATATCTCCGTCCAAAGCTCAGT
CATTACTCTCGGTATCCATGGATAAGCTGATTATACTGATTTTCTATGCA
TCAATTTATCTACCTGCATTAACTGTGTATCACTACACTCGACTAATTTA
AGCAATCGCCTAACTATAACTTCCCAACCCTATATCCTGCGGCTTAACCT
CCTCAGCACATCAACTATAAAAAAACCCTCCTAAACACCAATTGTATAAC
AGGGATCCCCTTATTCCTCACCTTAAAN
GCAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCAGAATAGACAGTAAAGACAGCACAAGTG
AGCTCCTGGGACTGGATTTTGGTGAGAAATTACTCAGTCTGAATCCAGAG
CCTTTGAAAGCCCTCTTTACCCTTGAAGATGGAGACAGCCCTTCTCAGAG
TCTTGATCCTGGTGAGAGCAAGAGAGAGAGTGAAGCTCAGGACTCCGTGA
GCCGGGGCTCAGATGATTCCGTTCCAGTTATCTCATTTATTGATTTTACT
GTAGAGTCTATCAGTGTTGTTGAGGAGGGATGGTCTGACCTTCTTGTGAA
TTTACCTGGTGATACTGCAGCCAACCATATAGGTTTCATTATATGTTTCC
TAACTTTTTCTAGTTTCGTGCATGCAACCTGTAAACCTCACTGCTGGAAG
CCCCGGATGTGCGGTGACACCAGCCGAGCCCTGAACAGCGCCCAGGCCTG
GTAACATACGGTACCCACTATCTGTGCCGACCCACTGAAATATCGACATG
TAGTTGTGAACCATATATATACATTGTTTATTTTAATATTGAGCTGTTTA
TCTTGCTCTGCCTTTGTTTATCATTTCTTCTCCCATAATTTTTTCTGTAT
TTCCAGATATATTATACAATATGATTTGTATTTTACTAATTAATTTATAT
TTTTACTGTTATATTTCTTATATATAAACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_g11.g1 MSMg01no084_g11.g1 CHROMAT_FILE:
MSMg01no084_g11.g1 PHD_FILE: MSMg01no084_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:25 2005
         (158 letters)



>mm_chr1_192623517_192624074
          Length = 558

 Score =  290 bits (150), Expect = 3e-83
 Identities = 156/158 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtgagctcctgggactggattttggtgagaaattactcagtctgaatccagagccttt 60
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 358 aagtgagctcctgggactggattttggtgagaaattacacagtctgaaaccagagccttt 299

                                                                       
Query: 61  gaaagccctctttacccttgaagatggagacagcccttctcagagtcttgatcctggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaaagccctctttacccttgaagatggagacagcccttctcagagtcttgatcctggtga 239

                                                 
Query: 121 gagcaagagagagagtgaagctcaggactccgtgagcc 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gagcaagagagagagtgaagctcaggactccgtgagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)