BAC Information

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BAC

Clone NameMSMg01-084H21
Chromosome1 (Build37)
Map Location 120,470,489 - 120,470,781
singlet/doubletsinglet
Overlap geneClasp1
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
Downstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084H21.T7 (MSMg01no084_h21.b1)MSMg01-084H21.TJ (MSMg01no084_h21.g1)
ACCAG304328AG304329
length716718
length of high quality
(start - end)
369 (38 - 406)298 (67 - 364)
definitionCHROMAT_FILE: MSMg01no084_h21.b1 PHD_FILE: MSMg01no084_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:32 2005CHROMAT_FILE: MSMg01no084_h21.g1 PHD_FILE: MSMg01no084_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
GTGTCCCGCCGGTGGCAGTGAATGGGAAGGTTCTTGAACACTGTTGGAGA
AAGAGGGGTGAGCCTTGAGATCTGATAGCCAGGCCCTACTTCCTGACTTT
TCACTGTGGCCCTGACTGTGGGATGTGGCCAGCCAGCCTCTTGCTGCCGT
GCCTTCCCCACTGAGATGGACTGTAGCTCCTCTGTGAGCCAAACAAACTC
TTCTTCCTTCAAGCTGCTTCTTGTCATGGATTTTTGTCACAGGGATGAGG
AAATTAACTAATGTTTAAGGACATGTAATATGATAAAATATCATGTGAAT
AACGTGTGCCACACTGTGTCACCGTGAGCTGTGGTGCATCGTGCTCCCGT
CCATCATAATGCTTGCTTCTCCTCTGACTAACGGCCACCTATTTTAACTT
GCGAATCTTAGGGAAATGTGTTGCTTTTCTCTATAATGTGACCAAATACC
TGACGAGGACTTAAGGCAAGAAGGGTTCCTTTTGACTCGTGCGTTGAAAG
TACGGACCCTCGTGGCAGTGACAGGAGGTTGTTCGCTCATATCCCAGTGA
GTCAGGAAGCAGGATTGTCTGGTACTAGAGCCCGATTCTAACCCAGAGGC
CTTTCTTTCTTCCAGGTAAAACCCACCTTCTACTTGTCCCCTCCTGTCCC
TCCGGAGAGAGCTCTG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCAATGGATACCAGCC
TTTTAATGAATATTCTGGTCCATATTTGATTGACTCCACTGAGAAGGAGC
CTGTGCATATGAAGAGCTGACTGTATTTCAGGGAGGGGCTATTTCTTAGA
CAACATTCCCAGAAGAAGATGACTGACATAGGAGCAAATATCAGAGGTGG
AGCTGGGTGTGGTTCAGCAGTAGAGCACTTGCTTAGCATCTTGAGGCCTG
GGTTCAATTCCCAGGACCATGTTTGTGCACAGAGATCACGATCCAGTGCC
CTAAGTACCAATGGCCCTGCTCTAGTTTGCTTTTCTGTTGATATGATACA
TATTAACCAAACCACTTGGGAAGTGGCTATCTAGGTTTTTGTCGACTTGA
CATAATCTAGAATCATTAGGGAAGAGGGGACCTCAACTGAGATAATGCTC
TCCCCAGACTGGTCTATGTTACATTTTCTTGACTGATGATTGATGTGTCA
AGATCCAACTCACTGTGGGCAATGCCACCCCTGCGCTTATGGCTCTGGTA
ACAGGCAAGCCTTGCAAAGACCGCCAGTAAGCAGTGTTTCTCCTGTGACT
TCTCCTAGTTCCTGTTCTCTGTGTTCCCTCCCCCGATTTCCCACCCTGAC
ATCTCTCTGTTTATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_h21.g1 MSMg01no084_h21.g1 CHROMAT_FILE:
MSMg01no084_h21.g1 PHD_FILE: MSMg01no084_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:32 2005
         (298 letters)



>mm_chr1_120470289_120470982
          Length = 694

 Score =  497 bits (257), Expect = e-145
 Identities = 286/297 (96%), Gaps = 4/297 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttcagctctgagccccaatggataccagccttttaatgaatattctggtccatatt 60
           |||||| |||||||||||||  |||||||||||||||||||||||||||||||  |||||
Sbjct: 201 tttgtttagctctgagccccgttggataccagccttttaatgaatattctggtatatatt 260

                                                                       
Query: 61  tgattgactccactgagaaggagcctgtgcatatgaagagctgactgtatttcagggagg 120
           ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tgattgactct-ctgagaaggagcctgtgcatatgaagagctgactgtatttcaggaagg 319

                                                                       
Query: 121 ggctatttcttagacaacattcccagaagaagatgactgacataggagcaaatatcagag 180
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 320 ggctatttcttagacaacattcccagaaga---tgactgacataggagcaaatatcagag 376

                                                                       
Query: 181 gtggagctgggtgtggttcagcagtagagcacttgcttagcatcttgaggcctgggttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtggagctgggtgtggttcagcagtagagcacttgcttagcatcttgaggcctgggttca 436

                                                                    
Query: 241 attcccaggaccatgtttgtgcacagagatcacgatccagtgccctaagtaccaatg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attcccaggaccatgtttgtgcacagagatcacgatccagtgccctaagtaccaatg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 694
Length adjustment: 9
Effective length of query: 289
Effective length of database: 685
Effective search space:   197965
Effective search space used:   197965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)