BAC Information

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BAC

Clone NameMSMg01-084J02
Chromosome1 (Build37)
Map Location 48,129,618 - 48,129,965
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084J02.T7 (MSMg01no084_j02.b1)MSMg01-084J02.TJ (MSMg01no084_j02.g1)
ACCAG304384
length673743
length of high quality
(start - end)
---502 (140 - 641)
definitionCHROMAT_FILE: MSMg01no084_j02.b1 PHD_FILE: MSMg01no084_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:37 2005CHROMAT_FILE: MSMg01no084_j02.g1 PHD_FILE: MSMg01no084_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAATTTGCGGCGCTAAACGACTCCTATATGCAGAGATCCGCGGXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXX
NTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTNTTTTTNNTTTTTTTTT
NTTTTTTTCTTNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGAAGCT
GAAAGAATCAGTGTGAATTAGTCAATTAGAAAAGAGATTGAGTCATGACA
ACTGAGTTGAATCAGCCAGCCAGAATTCAGAAAGAGCTAAGAAGAATGAG
TTTTTTCAACAGTAGCCCACAGACATGACAATTATATCCAGGGAATAAAA
ATTGCTTATGATCTAGCTGGAATGCAAACATACCAAACAGTTTTAATCAC
TCTGGCTGGAATACTGATATGCCTTTAGTACATACCTTTATCCACAATGA
TGCCTAATTGAGGGGCAGACAAAATGATGAATCAGAGAATGATCTGGTAA
AATAAATCCGAGATAGGATATGCCCAGATTTCATAGGAACAGATTTCACA
CTAGTACAAGAGGAAAGAGTGTATTGGCATTCAGTTGAGTTCAGTGAATT
TGAGTTGAGACAGTCAGTTGGGAATCAGTGCAGTAAGCGTGGTGTAGCAC
GGTTGAGTTCATTTGTCAGTTCATGCATTTCAGTAAAGGACATAAAAGGC
CGTCAAAGACTGAGAATGTATTGTTTTCCTTATATTTATTCAATTTTTGT
CTTATCCACATCGTGTTCTCCGTATATGTATCTTATCAATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_j02.g1 MSMg01no084_j02.g1 CHROMAT_FILE:
MSMg01no084_j02.g1 PHD_FILE: MSMg01no084_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:37 2005
         (502 letters)



>mm_chr1_48129064_48129965
          Length = 902

 Score =  642 bits (332), Expect = 0.0
 Identities = 344/348 (98%)
 Strand = Plus / Minus

                                                                       
Query: 155 aataaaaattgcttatgatctagctggaatgcaaacataccaaacagttttaatcactct 214
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 902 aataaaaattgcttatgatctagctggagtgcaaacataccaaacagttttaatcactct 843

                                                                       
Query: 215 ggctggaatactgatatgcctttagtacatacctttatccacaatgatgcctaattgagg 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ggctggaatactgatatgcctttagtacatacctttatccacaatgatgcctaattgagg 783

                                                                       
Query: 275 ggcagacaaaatgatgaatcagagaatgatctggtaaaataaatccgagataggatatgc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggcagacaaaatgatgaatcagagaatgatctggtaaaataaatccgagataggatatgc 723

                                                                       
Query: 335 ccagatttcataggaacagatttcacactagtacaagaggaaagagtgtattggcattca 394
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 722 ccagatttcataggaacagatttcacaatagtacaagaggaaagagtgtattggcattca 663

                                                                       
Query: 395 gttgagttcagtgaatttgagttgagacagtcagttgggaatcagtgcagtaagcgtggt 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gttgagttcagtgaatttgagttgagacagtcagttgggaatcagtgcagtaagcgtggt 603

                                                           
Query: 455 gtagcacggttgagttcatttgtcagttcatgcatttcagtaaaggac 502
           ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 602 gtagcacagttgagttcattcgtcagttcatgcatttcagtaaaggac 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)