Query= MSMg01no085_b19.b1 MSMg01no085_b19.b1 CHROMAT_FILE:
MSMg01no085_b19.b1 PHD_FILE: MSMg01no085_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:26 2005
(284 letters)
>mm_chr1_27699655_27700338
Length = 684
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Minus
Query: 1 taaataaataaataaataaataaataaataaataaataagtggaattggacctttaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 taaataaataaataaataaataaataaataaataaataagtggaattggacctttaacaa 464
Query: 61 gaatgtctacattatgaacacaaacatacatattcacatagagggaaggacagagggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaatgtctacattatgaacacaaacatacatattcacatagagggaaggacagagggaac 404
Query: 121 aagggagagtaaaatggggagagcatggcgtgaacacagaaagttataatattgatactc 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aagggagagtaaaatggtgagagcatggcgtgaacacagaaagttataatattgatactc 344
Query: 181 cagaatttattttctatgcaaatgaattgtattttctctgtaataaaggaagatggaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagaatttattttctatgcaaatgaattgtattttctctgtaataaaggaagatggaatt 284
Query: 241 tgctacactggtaatgaacttagtaatttttatggaataccaaa 284
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 283 tgctacactggtaatgaacttagtaatttttatggtataccaaa 240
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no085_b19.g1 MSMg01no085_b19.g1 CHROMAT_FILE:
MSMg01no085_b19.g1 PHD_FILE: MSMg01no085_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:26 2005
(273 letters)
>mm_chr1_27532404_27533076
Length = 673
Score = 449 bits (232), Expect = e-130
Identities = 264/276 (95%), Gaps = 6/276 (2%)
Strand = Plus / Plus
Query: 1 aaagccaatagtttttatcactgccaaaatttgttagctgaaaataa-agttttccactt 59
||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||
Sbjct: 201 aaagccaatagtttttatcacagccaaaatttgttagctgaaaataata-ttttccattt 259
Query: 60 caccagaagag--gttttttttttttttttaatcatttggaaaaaaatgaactagaatgt 117
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 260 caccagaagaggagttttttttttttttt--atcatttggaaaaaattgaactagaatgt 317
Query: 118 tcttattaggtttataagacaagtgtaaatttaattatatacattttaaccaagcaaata 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 tcttattaggtttataagacaagtgtaaatttgattatatacattttaaccaagcaaata 377
Query: 178 tcacaaatgtgaatagtgttagtttatatcaagaattaaaagttagagttaatgtcatac 237
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 378 tcacaaatgtgaatagtgttagtttacatcaagaattaaaagttggagttaatgtcatac 437
Query: 238 ttcttgctgttattgttgataatgggcaattccttt 273
||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttcttgctgttattgttgataatgggcaattccttt 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
