GCGGCGCTATACGACTCCTATATCCAGAGATCCGCGGAATTCTAAGTTTA
TTACTCTGAACTAGCCCTGAGAATACTAGCTCCTATCCAGCAAACAGATG
CCTGGTTACTGCCAACACTGGGGCATTTCGTCTGGATGAATAACATTCTT
ATGAAACTCCAAGCCCAGGGTCAGCTCAAAGGCTGCCTGGGACATTGGTG
AAGGCCAAACAGTAGAGTTCAACCTGATTTAGGTATTAGTAAAATAATAA
AACAATACTGAAAGAAAGCACACAGATTCATACACTGACTAACACAGGGA
CAGGTTTGGTGCATTCATGCTATGGGATTCCAGGAGACTAAGTTTCCATG
AAACTCTTTGCCTTGGGACTGCATCCAAGCCTTTAGGCCTATCACACAGT
CTTCTCTAGAATGGGTGTGGCAGGAAACAGGCAACCTTGGGAGGTAGGAG
GTGGAGGAATCATCTAGAATGTACTAGAGACCTGGGAGGTGAGAGACTTT
CAGGACTCAAAGGGAGGAAACTTGAATGAAGTGCTCTACAATGGTGGAGG
GTGGAATTTGTAGACTCCAGGACATCAATTGGAGGGATGGGGTTGCCATC
CCACAGTCAAAAGCTCTGACCCAAAATTGTTCTTGTCTGAAGGAACTGCA
GGGAGAAAAATGGAGACCAGCATGAAAGAAAGGATTTCCAGTGACAGGCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCACGAAACTGTGCCTAGTTTTCATAA
TAAAATTGCTATAAAACAAAAACCTGCCCTTTGATTCTTACCCTGACTTC
CTGGTTTAGAAGGTGTCAGCACTGCATCATCCCCTTTGCAATAATGTAGT
CCACCAGGGGGCAGTGCTAAGAGTCCGTGTTACACTATTCAGAGTCTTAG
CCTCCAAAACTATGAGCTAATTTATTCACAAAGCTCCTAGATTTGAATAT
TTCTTCATAACACACAAAAAAGATAAATACATAAAATCAAAATTTGATTT
TTTTCAAAGAAATTTTTACATTTTAATGTATATTCAAAGGTGAGAATACT
ATGAATTACTGCAATTAAAGGATATATATATATATATACATATATTATGA
GTTAAATTATCTAAGAAATTTTAGATTAGATAGAAAATTTGAAGATATTA
CTTTTTACATGCTTCAAAATTGCTTTCCAAGTAAGAGAGATATTTGTCAT
TTTTGGGAAAAAGTTACAAATTGGAAGTATTGGAAGAATTTCTCTTTTGC
TATGTTCTAATGTCTGCTTATAATTATAGTTATGTTTCCCTCATTTCTTA
AAACATCATTTATCTGTAACTTTATTATATGTTTATATCCATGTCTTGTA
GCTCAATTT

Query= MSMg01no086_b20.g1 MSMg01no086_b20.g1 CHROMAT_FILE:
MSMg01no086_b20.g1 PHD_FILE: MSMg01no086_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:43 2005
         (548 letters)



>mm_chr1_44494434_44495381
          Length = 948

 Score = 1025 bits (530), Expect = 0.0
 Identities = 542/548 (98%), Gaps = 4/548 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacgaaactgtgcctagttttcataataaaattgctataaaacaaaaacctgccctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccacgaaactgtgcctagttttcataataaaattgctataaaacaaaaacctgccctttg 489

                                                                       
Query: 61  attcttaccctgacttcctggtttagaaggtgtcagcactgcatcatcccctttgcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attcttaccctgacttcctggtttagaaggtgtcagcactgcatcatcccctttgcaata 429

                                                                       
Query: 121 atgtagtccaccagggggcagtgctaagagtccgtgttacactattcagagtcttagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgtagtccaccagggggcagtgctaagagtccgtgttacactattcagagtcttagcct 369

                                                                       
Query: 181 ccaaaactatgagctaatttattcacaaagctcctagatttgaatatttcttcataacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccaaaactatgagctaatttattcacaaagctcctagatttgaatatttcttcataacac 309

                                                                       
Query: 241 acaaaaaagataaatacataaaatcaaaatttgatttttttcaaagaaatttttacattt 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 308 acaaaaaagataaatacataaaatcaaattttgatttttttcaaagaaatttttacattt 249

                                                                       
Query: 301 taatgtatattcaaaggtgagaatactatgaattactgcaattaaaggatatatatatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taatgtatattcaaaggtgagaatactatgaattactgcaattaaaggatatatatatat 189

                                                                       
Query: 361 atata----catatattatgagttaaattatctaagaaattttagattagatagaaaatt 416
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atatatatacatatattatgagttaaattatctaagaaattttagattagatagaaaatt 129

                                                                       
Query: 417 tgaagatattactttttacatgcttcaaaattgctttccaagtaagagagatatttgtca 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgaagatattactttttacatgcttcaaaattgctttccaagtaagagagatatttgtca 69

                                                                       
Query: 477 tttttgggaaaaagttacaaattggaagtattggaagaatttctcttttgctatgttcta 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tttttgggaaaaagttacaaattggaagtattggaagaatttctcttttgctatgttcta 9

                   
Query: 537 atgtctgc 544
           || |||||
Sbjct: 8   atatctgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)