Query= MSMg01no086_h04.b1 MSMg01no086_h04.b1 CHROMAT_FILE:
MSMg01no086_h04.b1 PHD_FILE: MSMg01no086_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:12 2005
(448 letters)
>mm_chr1_37453442_37454288
Length = 847
Score = 822 bits (425), Expect = 0.0
Identities = 437/441 (99%), Gaps = 1/441 (0%)
Strand = Plus / Plus
Query: 8 gaattcctactctgtactgctgttcctcattgcccaagcacctgagctgctagtattttc 67
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctactctgtattgctgttcctcattgcccaagcacctgagctgctagtattttc 267
Query: 68 tcagaactttagtcacgggaaggctgcactaagagccagggtagctgagcaatttcctag 127
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcagaactttagtca-gggaaggctgcactaagagccagggtagctgagcaatttcctag 326
Query: 128 tcagtcctcatgtgcccccatgccttggcagtatgtcctggccagttctgggattcagga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcagtcctcatgtgcccccatgccttggcagtatgtcctggccagttctgggattcagga 386
Query: 188 ataggcggctccctctgacattcagccctgcctgggtctgaaggagcagagcagatgctg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ataggcggctccctctgacattcagccctgcctgggtctgaaggagcagagcagatgctg 446
Query: 248 gtttgactctccgcactcacactggagggagacgccactgtctgacttccctgcctggcc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtttgactctccgcactcacactggagggagacgccactgtctgacttccctgcctggcc 506
Query: 308 tggtactcactagagcagtcccagctgctgtcaggccctgagctagggtcactgtggtgc 367
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tggtactcattagagcagtcccagctgctgtcaggccctgagctagggtcactgtggtgc 566
Query: 368 tgtcacaccctgttttaggcgtctttgtgtctttgtggtgggctttctctttgatgagtt 427
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgtcacaccctgttttaggtgtctttgtgtctttgtggtgggctttctctttgatgagtt 626
Query: 428 ttacgtttgagttgctaatgg 448
|||||||||||||||||||||
Sbjct: 627 ttacgtttgagttgctaatgg 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space: 366606
Effective search space used: 366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_h04.g1 MSMg01no086_h04.g1 CHROMAT_FILE:
MSMg01no086_h04.g1 PHD_FILE: MSMg01no086_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:12 2005
(390 letters)
>mm_chr1_37589524_37590318
Length = 795
Score = 665 bits (344), Expect = 0.0
Identities = 382/398 (95%), Gaps = 10/398 (2%)
Strand = Plus / Minus
Query: 1 caggttcgtgttcatggaaatggaaaggttgggaaagttgtaggcgggtgctgggagaat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caggttcgtgttcgtggaaatggaaaggttgggaaagttgtaggcgggtgctgggagaat 436
Query: 61 gggacgagaatgattctgagtgttatgcgctgctgtggatcgggtaccgtggaactttct 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gggacgagaatgattccgagtgttatgcgctgctgtggatcgggtaccgtggaactttct 376
Query: 121 ccacggtcaaacacaatacagaaacaggaaaaccaagtaagtatcgcagatccctgcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccacggtcaaacacaatacagaaacaggaaaaccaagtaagtatcgcagatccctgcacc 316
Query: 181 tggccggtctgtgtccgcacgcctgactcagggcc----acatgctcgtcacgtccctaa 236
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 315 tggccggtctgtgtccgcacgcctgactcagggccacatacatgctcatcacgtccctaa 256
Query: 237 gacacagcgcctgtgcaatgcttgcttcagcaaaac---tgtttgggggaactttaaaac 293
||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 255 gacacagcgcctgtgcaatgcttgcttcagc-aaacatgtgttt-ggggaactttaaaac 198
Query: 294 agccttattgagttataatttacatactatacaattcaaccattgaacatactgacgaat 353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 197 agccttattgagttataatttacatactaaacaattcaaccattgaacatactgacgaat 138
Query: 354 aataattcact-tggcggggggtaggatgcctacagta 390
||||||||||| || ||||||||||||||||||||||
Sbjct: 137 aataattcactgggggggggggtaggatgcctacagta 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 795
Length adjustment: 9
Effective length of query: 381
Effective length of database: 786
Effective search space: 299466
Effective search space used: 299466
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
