BAC Information

Click to search

BAC

Clone NameMSMg01-086I08
Chromosome1 (Build37)
Map Location 20,410,167 - 20,410,561
singlet/doubletsinglet
Overlap genePkhd1
Upstream genenone
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086I08.T7 (MSMg01no086_i08.b1)MSMg01-086I08.TJ (MSMg01no086_i08.g1)
ACCAG305809AG305810
length670681
length of high quality
(start - end)
400 (40 - 439)395 (56 - 450)
definitionCHROMAT_FILE: MSMg01no086_i08.b1 PHD_FILE: MSMg01no086_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:18 2005CHROMAT_FILE: MSMg01no086_i08.g1 PHD_FILE: MSMg01no086_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATCGAGAGATCCGCGGAATTCTAACTGATCATACTGAATGGCT
GAAAAGACCTAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCATACCAGTCAGAATGGCTAAGAT
CAAAAAATTCAGGTGACAGCAGATACTGGCAAGGAAGTGGAGAAAGAGGA
ACACTCCTCCATTGCTGGTGGGATTGCAGGCTTGTACAACAGCTCTGGAA
ATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAAGATC
CAGCAATACCTCTCCTGGGCATATACCCAGAAGATGTTGCAACTGGTAAT
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAG
AAGCTGGATAGAACCCAGATGTCTCTCAACAGAGGAATAGATACACAAAA
ATGTGGTACATTTACACAATAAAGTACTACTCAGCTATTAAAAACAATGA
CTTTATGAAATTCTTGCGCAAATGGATGTATCTGGAGGATATCATCCTGA
GAGCGGTAACCCACTCACATAAAAGTCACCAGATATACCATCCCTGACCA
GTGGATATTAGCCCATCAACTTAGAATACCACAGAAACTCCTTGGTCATC
ATCTATAAAATCCCCCAAGA
GGAGGCCGCCTGTTTCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGAAAGAATGAGTTACCAGGTACATCGAAGGTTGAGGCCAATA
TGAATAAAATGTATCACCATGACAGAAACAGTTGTGGTAGAGATGTGGGA
CAAAGGCCCAGCTGTGAGTAGAAATTATAAGAGAAAGGAATGAAAGAATT
AAAGACAAGGAAAGCCAGCTCTTTCAGAGATTATTGGTATATAGTAAAGA
TAAAACACATTTTCTTTTTTGCAAGGAAGTTGTCTTTAAAACAATGTTTG
TTTTCTTTATAAAGCATAACAGATTATTTTGTGGTCATCACAGATGATGA
TTAATTTTACAGCTAGCCAAAAGTTTGTTTTCATGTTTCTTTTATTTTTC
CTTCAAACCTTAACTAGCTGCTAAAGTCTCTTTTACTTCCTTTCCAGAGA
AATACGAGACGCTTGACGGACCTGAGCAATTGCATGTAAAAGATGTGTTC
GTTTATGTATTTTAGAGGCGGAAGCAACTGTAATGATGCTTGATTGATTT
TTACCAAATTACCCTAGGCCACTTGTGAAGATGCAGTCAGCTTTCATGCA
TGTCATAACAAGCAATTTTTGAGTCCCATGCGACGTCTGATTTCAACTCT
GCTCTTGAATGTACTTTTTACAAGTGCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_i08.g1 MSMg01no086_i08.g1 CHROMAT_FILE:
MSMg01no086_i08.g1 PHD_FILE: MSMg01no086_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:18 2005
         (395 letters)



>mm_chr1_20409778_20410572
          Length = 795

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaaagaatgagttaccaggtacatcgaaggttgaggccaatatgaataaaatgtatc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 caggaaaggatgagttaccaggtacatcgaaggttgaggccaatatgaataaaatgtatc 725

                                                                       
Query: 61  accatgacagaaacagttgtggtagagatgtgggacaaaggcccagctgtgagtagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 accatgacagaaacagttgtggtagagatgtgggacaaaggcccagctgtgagtagaaat 665

                                                                       
Query: 121 tataagagaaaggaatgaaagaattaaagacaaggaaagccagctctttcagagattatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tataagagaaaggaatgaaagaattaaagacaaggaaagccagctctttcagagattatt 605

                                                                       
Query: 181 ggtatatagtaaagataaaacacattttcttttttgcaaggaagttgtctttaaaacaat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 604 ggtatatagtaaagataaaacacattttcttttttgtaaggaagttgtctttaaaacaat 545

                                                                       
Query: 241 gtttgttttctttataaagcataacagattattttgtggtcatcacagatgatgattaat 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 544 gtttgttttctttataaagcataacagattattttgtggtcattacagatgatgattaat 485

                                                                       
Query: 301 tttacagctagccaaaagtttgttttcatgtttcttttatttttccttcaaaccttaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttacagctagccaaaagtttgttttcatgtttcttttatttttccttcaaaccttaact 425

                                              
Query: 361 agctgctaaagtctcttttacttcctttccagaga 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 424 agctgctaaagtctcttttacttcctttccagaga 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)