BAC Information

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BAC

Clone NameMSMg01-086K24
Chromosome1 (Build37)
Map Location 72,513,081 - 72,513,423
singlet/doubletsinglet
Overlap geneMarch4
Upstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5
Downstream geneSmarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086K24.T7 (MSMg01no086_k24.b1)MSMg01-086K24.TJ (MSMg01no086_k24.g1)
ACCAG305931AG305932
length679761
length of high quality
(start - end)
395 (45 - 439)344 (130 - 473)
definitionCHROMAT_FILE: MSMg01no086_k24.b1 PHD_FILE: MSMg01no086_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:31 2005CHROMAT_FILE: MSMg01no086_k24.g1 PHD_FILE: MSMg01no086_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTGTGGTCCACAAATCCGCGGAATTCTTTGTTCAGTTCCGAGCCCCAT
TTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCC
TTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT
TACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCA
TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTAAGTGTCTCT
GGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTACTACAAGG
AGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGT
GCCATCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGCATGGTTTTA
GCTCCCTTGTCGAATATCAATTGACCCTACGTGTGTGGGTTCACTTCCTG
GGTCTTCAATTCTACTCCCTTGGGCTACTTGTTTGGCTCCATACCAGTAC
TATGTTGCCTTTACCACCATCGCTCTGCATTAAAGCTTTTGTTCCGGCGC
GGTGTATCCATCAGAAGTTCTTTTATCCT
NTTTTTTNNNNTTTTCCCTTCGTCCCCGCCTCCGCCCTTTCCTCTCTATT
CCCNTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATAGAACATCTCCCTGAAT
TGGAGGCAGGGGGGGGCATGGGGGGAAAGGGGGCACTTATGTGGGAAGGG
GGCTGTAATTAGAGGCAACTTTAATTTCTAATCAATCATTAGTTCTAAGA
TATGGCTTTCCTCTCCCACCCCAGCCTCTGAGCAGGTGTATTGACATGGT
AGGAAGACTTGTCTTAAAAAAAACCTAAAGACCAGCAAAGCTCTACAAAG
AGTGGCTGAAATGTGAAATGATCAATGATGTGAGAATGGGATCTAAATAT
AGGACTTTTCAGCATAGATGGATGACGACTGGGGGTGAAGGCAGGGGGAT
GAACCAAGTGTTGAACAATTATAAAGCCTAAGAACAAGAGGAACATGGCT
CGCCTAGTCCCAGACAGGACTGACTGATAACATTGAGCCACAAGTGTTTG
CAGAATGGCCTGGTCATCTGACAGAGACTGAAAGCAAACAAAAGGAAGCT
AGACTTTCCTTATCAGCCCCTAATTACGGGAAACATGTGTGTAAGATCAT
GCTGGGACTCTGGTTGGGTTTGCAATGTGTGTCACCATGTGGAGAATGTC
TCTTGCTCTGCGGTTGGCTTGGCATTTTCACATTGAGACCGAACGCGGGG
GTCCACCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_k24.g1 MSMg01no086_k24.g1 CHROMAT_FILE:
MSMg01no086_k24.g1 PHD_FILE: MSMg01no086_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:31 2005
         (344 letters)



>mm_chr1_72512881_72513623
          Length = 743

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%), Gaps = 1/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatagaacatctccctgaattggaggcaggggggggcatggggggaaagggggcactta 60
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 543 ttatagaacatctccctggattggaggcaggggggggcatggggggagagggggcactta 484

                                                                       
Query: 61  tgtgggaagggggctgtaattagaggcaactttaatttctaatcaatcattagttctaag 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 483 tgtgggaagggggctgtaattagaggaaactttaatttctaatcaatcattagttctaag 424

                                                                       
Query: 121 atatggctttcctctcccaccccagcctctgagcaggtgtattgacatggtaggaagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atatggctttcctctcccaccccagcctctgagcaggtgtattgacatggtaggaagact 364

                                                                       
Query: 181 tgtcttaaaaaaaacctaaagaccagcaaagctctacaaagagtggctgaaatgtgaaat 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgtctt-aaaaaaacctaaagaccagcaaagctctacaaagagtggctgaaatgtgaaat 305

                                                                       
Query: 241 gatcaatgatgtgagaatgggatctaaatataggacttttcagcatagatggatgacgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gatcaatgatgtgagaatgggatctaaatataggacttttcagcatagatggatgacgac 245

                                                       
Query: 301 tgggggtgaaggcagggggatgaaccaagtgttgaacaattata 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgggggtgaaggcagggggatgaaccaagtgttgaacaattata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)