BAC Information

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BAC

Clone NameMSMg01-086L13
Chromosome1 (Build37)
Map Location 148,883,902 - 148,884,188
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086L13.T7 (MSMg01no086_l13.b1)MSMg01-086L13.TJ (MSMg01no086_l13.g1)
ACCAG305953AG305954
length692699
length of high quality
(start - end)
514 (49 - 562)287 (55 - 341)
definitionCHROMAT_FILE: MSMg01no086_l13.b1 PHD_FILE: MSMg01no086_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:34 2005CHROMAT_FILE: MSMg01no086_l13.g1 PHD_FILE: MSMg01no086_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTACCTATTTCGAGAGGATCCGCGGAATTCAAGGCCCTTACCCAACCA
TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGA
GAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCC
ACTCTCGCCCTACCTATTCAACATTGTACTTGAAGTCCTAGCCAGATCAA
TTAGACAAAAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTC
AAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAA
AAATTCTACCAGAGAATTCCTAAACCTGATAAACAGCTTCAGTGAAGTAG
CTGGATATAACATTAACTCAAACAAGTCCATGGCCTTCTCTACTCAAAGA
ATAAACAGGCTGAGAAAGAAATTAGGGAAGCAACACCCTTCTCAATAGTC
ACAAATAATTTAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGA
TCTGTATGATAAAAATTTCAAATCCCTGAAGAAAGAAATTAAAGAATATC
TCAGAAGATGGAAATATCTCCCATGCTCATGGATTGGCAGGATCAATATA
GTATACACGGCTATCTTGCCACCAGCAATCTCCAGTTCATTGTAATCCCT
ATCAAAATTCCCACTCAATTCTTTCAAGAATTATGAACGGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAACTAATGAAAGCAATCTAAGCCACACATAGTAGTACATGCCTATA
ATCCCAGGATGCTGAAGCAAGAACACAAGTTTAGATTATAGAAGTCCATT
GTTTTATGTTTTATAAAGAGCTAAAAAGGAAAAAGTGACAAAATGATAAA
AGTTGAAGAGGATAGAAAGGTTAATTTCTTTGACTTGGTATACAGCAAAT
AATTAACAAAATCATTTTATCATCCCTTACATAAAAATTAAGACAGATAC
ATACTTATAAAAGTATAAATAAAAGAAATGTAATCACACAATATATTTTA
GTATATCACAGCTATATAATATTCACAAATGTGTGATATTCACAAGTAAA
ATTTGTGGAATGCTATAACAACAAAAACATGTCAGGTGGTGTCCCACGCC
TTTAATCCCAGCACTCTGGAGGCAGAGGTAGGCGGATTTCTGAGGTCGAG
GCCAGCCAGGTTCTACCAAGTGAGTTCCAGGACAGCCAGTGCTACACAGA
GAAACCTTGTCTCACAAAAAAAAAAAAAGTAAAAACTTCCAGTTCCTTTA
CGATAAGAATGTTTTCCAAAAAAATCCTTAGTTTTCCTAATACCATTATT
AACCTATAATTGTATTTTATCGTTATTTTTGCAGGCATTCTCTGTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_l13.g1 MSMg01no086_l13.g1 CHROMAT_FILE:
MSMg01no086_l13.g1 PHD_FILE: MSMg01no086_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:34 2005
         (287 letters)



>mm_chr1_148883702_148884388
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactaatgaaagcaatctaagccacacatagtagtacatgcctataatcccaggatgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aactaatgaaagcaatctaagccacacatagtagtacatgcctataatctcaggatgctg 260

                                                                       
Query: 61  aagcaagaacacaagtttagattatagaagtccattgttttatgttttataaagagctaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aagcaagaacacaagtttagattatagaagtccattgttgtatgttttataaagagctaa 320

                                                                       
Query: 121 aaaggaaaaagtgacaaaatgataaaagttgaagaggatagaaaggttaatttctttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggaaaaagtgacaaaatgataaaagttgaagaggatagaaaggttaatttctttgac 380

                                                                       
Query: 181 ttggtatacagcaaataattaacaaaatcattttatcatcccttacataaaaattaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtatacagcaaataattaacaaaatcattttatcatcccttacataaaaattaagac 440

                                                          
Query: 241 agatacatacttataaaagtataaataaaagaaatgtaatcacacaa 287
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatacatacatataaaagtataaataaaagaaatgtaatcacacaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)