BAC Information

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BAC

Clone NameMSMg01-086O02
Chromosome1 (Build37)
Map Location 83,503,991 - 83,584,306
singlet/doubletdoublet
Overlap genenone
Upstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086O02.T7 (MSMg01no086_o02.b1)MSMg01-086O02.TJ (MSMg01no086_o02.g1)
ACCAG306071AG306072
length700710
length of high quality
(start - end)
531 (69 - 599)282 (69 - 350)
definitionCHROMAT_FILE: MSMg01no086_o02.b1 PHD_FILE: MSMg01no086_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:47 2005CHROMAT_FILE: MSMg01no086_o02.g1 PHD_FILE: MSMg01no086_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,503,991 - 83,504,521)(83,584,026 - 83,584,306)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGCAGAGGATCCGCGGA
ATTCACCAGGTATGCCAGGTTAAAAACTTGACCCCCTCTGTACATGTCCA
TATCAGAGTTTCCTAAACTTGTGAATATGTATACAGAGATGTTGCAGACA
TGACTTAAGAGTATTGTGAAAGTAGAATAAGTTACTTGCTTATCTGCAAA
ACAGTAAGAAAATGAATCATCCTTGAGTATTATAGAAGGAACACAACTTT
GTTAAGTTCATAACTGTAAGGCCTCGGAAATGCAAGAAAATGAGACCACA
ATAAATGTATTTCCTGAGGCTCTAAATGCATTATGATTAGAGCATTAACA
GAAACTGAGTATACACTACCTGTTTCCTTTACTCACCTGTGTGTAGGTAG
AAAGGAAAATTTACATATTTTTCCAACAGGCTATTTTAAGCATCTATTAC
AGCACTAGGCAGTTTTAGAAACATGAGTTTCTAATAGCACATTAAAGAAA
ATTTCTGCCACTATGCAGTTTCCATCTTGCAGGGAGATTAACATGTGACC
TTTCTCTAAACAGGTGCTATTGGAATAATTTGTCAAATCAAGAGCATGCC
TACCCACAACTTAGACAAACCTTTTGCATGGAATGTATTCTTAATAAAAA
ACCTCCCTATGGAGTGATATTTATATAAGGGACTCTCCCAAATGGGGCTN

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAACAGGAAATGAGATGGAGTGAGATGGTGG
ACAATGAGAAAGACTTGGCTTCAGCTTCCATGTCAATTATTGTATAAAAT
GTTAACATCCCCCTGGATGACTTTGACATTGCAACAAATTCAAAATTAAA
CTGGAATAAGCCAAAGTGTCTCCACGCTCCACAAAACAGTAATTTCTATT
TCATTGCCCACACACTCCTCTTAAACTGTGTCATACACAGACTCACACAA
GTTAATAAGTTCAGACTTTGGGATTTCCCAGTGAGTCATCTGTGGCCATT
GGAAAGACTAATCTGAGCCTGGCGTGTACACAGCCATGCTACAGAAACAG
AACCAGCAGTCTGCTCATATACTGACTTAAAACAAAATATTGGATACGAG
ACGCCACCTCACAAAGAAAAGTTTTATGACAGCTTTCAAAAAATCAACTT
TGACCTGGGCGGTTGTGGTGCATGCCCTTCAACCCAACACTTTGGGAATC
CGCAGGCAGGCGGATTTCTGTGAAGTTTAAGGCAGCATCTTCTAAACTCG
ACTTCCAGTTTTTCCACAATTCCTTAGAAAAACACCTGCCTTGGATAAAA
ACATCAAAACTTCACCCTCCTTCTCCACTCTTAAATATCTTCCCCTTGAG
GGTGCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_o02.b1 MSMg01no086_o02.b1 CHROMAT_FILE:
MSMg01no086_o02.b1 PHD_FILE: MSMg01no086_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:47 2005
         (531 letters)



>mm_chr1_83503791_83504721
          Length = 931

 Score = 1019 bits (527), Expect = 0.0
 Identities = 530/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaaaaacttgaccccctctgtacatgtccatatcagagtttcctaaacttgtgaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttaaaaacttgaccccctctgtacatgtccatatcagagtttcctaaacttgtgaatat 260

                                                                       
Query: 61  gtatacagagatgttgcagacatgacttaagagtattgtgaaagtagaataagttacttg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatacagagatgttgcagacatgagttaagagtattgtgaaagtagaataagttacttg 320

                                                                       
Query: 121 cttatctgcaaaacagtaagaaaatgaatcatccttgagtattatagaaggaacacaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatctgcaaaacagtaagaaaatgaatcatccttgagtattatagaaggaacacaact 380

                                                                       
Query: 181 ttgttaagttcataactgtaaggcctcggaaatgcaagaaaatgagaccacaataaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttaagttcataactgtaaggcctcggaaatgcaagaaaatgagaccacaataaatgt 440

                                                                       
Query: 241 atttcctgaggctctaaatgcattatgattagagcattaacagaaactgagtatacacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcctgaggctctaaatgcattatgattagagcattaacagaaactgagtatacacta 500

                                                                       
Query: 301 cctgtttcctttactcacctgtgtgtaggtagaaaggaaaatttacatatttttccaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgtttcctttactcacctgtgtgtaggtagaaaggaaaatttacatatttttccaaca 560

                                                                       
Query: 361 ggctattttaagcatctattacagcactaggcagttttagaaacatgagtttctaatagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctattttaagcatctattacagcactaggcagttttagaaacatgagtttctaatagc 620

                                                                       
Query: 421 acattaaagaaaatttctgccactatgcagtttccatcttgcagggagattaacatgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattaaagaaaatttctgccactatgcagtttccatcttgcagggagattaacatgtga 680

                                                              
Query: 481 cctttctctaaacaggtgctattggaataatttgtcaaatcaagagcatgc 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctttctctaaacaggtgctattggaataatttgtcaaatcaagagcatgc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no086_o02.g1 MSMg01no086_o02.g1 CHROMAT_FILE:
MSMg01no086_o02.g1 PHD_FILE: MSMg01no086_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:47 2005
         (282 letters)



>mm_chr1_83583826_83584507
          Length = 682

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacaggaaatgagatggagtgagatggtggacaatgagaaagacttggcttcagcttc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 481 caaacaggaaatgagatggagtgagatggtgggcaatgagaaagacttggcttcagcttc 422

                                                                       
Query: 61  catgtcaattattgtataaaatgttaacatccccctggatgactttgacattgcaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catgtcaattattgtataaaatgttaacatccccctggatgactttgacattgcaacaaa 362

                                                                       
Query: 121 ttcaaaattaaactggaataagccaaagtgtctccacgctccacaaaacagtaatttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcaaaattaaactggaataagccaaagtgtctccacgctccacaaaacagtaatttcta 302

                                                                       
Query: 181 tttcattgcccacacactcctcttaaactgtgtcatacacagactcacacaagttaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcattgcccacacactcctcttaaactgtgtcatacacagactcacacaagttaataa 242

                                                    
Query: 241 gttcagactttgggatttcccagtgagtcatctgtggccat 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttcagactttgggatttcccagtgagtcatctgtggccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)