BAC Information

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BAC

Clone NameMSMg01-087A11
Chromosome1 (Build37)
Map Location 80,571,749 - 80,572,041
singlet/doubletsinglet
Overlap geneDock10
Upstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087A11.T7 (MSMg01no087_a11.b1)MSMg01-087A11.TJ (MSMg01no087_a11.g1)
ACCAG306175AG306176
length707691
length of high quality
(start - end)
293 (60 - 352)294 (56 - 349)
definitionCHROMAT_FILE: MSMg01no087_a11.b1 PHD_FILE: MSMg01no087_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:59 2005CHROMAT_FILE: MSMg01no087_a11.g1 PHD_FILE: MSMg01no087_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGATT
CTATCCAGTGTCCCTGATGCAAGTACAGACTGGCTCTGCCATACCACACT
GCCACAAATTGCTTTGAGTACTGGGCATAGCCATCTAAGAGATGTTATTA
CACACAGTGTCTACCTCTTCTGGGACATGGCAAAAATCCTCCTTTTACTG
ACCTAAAAATGAGGATTTCAGAATGCCGATAGAATCAAGGTTTCCTGTAA
TAAATGATAACTGGGTCAAAACTTCTGACAGGGAATATTAGGCTGGCCAT
CTATCATGATATATGTCCACAAATCACTGTAATATAAACTATAATGAGAA
TTCTAACTTAACCTCTGACCTCAAATCATTTTACATTGATTGATGGTGTA
ACAGCAGCGGACAGGCTATTTCCTCTACGTGACTTACGGAACAAGGCTTT
ACTGCCTCCTGACAAACNCAACCCACAAATAAGAAAGCCTAATATTCTCC
TTGAAAAAAGGGTATGGCATTTAAAAAATTTGACCCCTCCGCAATTTTTT
AAAAAAATTCCGAATAAAAAAAAAAAAATTTTATCTCGTCTTTTCAGGAT
GGCACACCCCCTTGGTTACTTTTTCTCCAACTTCCGCTGATTCCCTTCTT
CGAATAGTAAAAGAAAACGGGTATTTTTCCCCTTTAAATAATATTTTTTC
TCCCCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATAAAGTCTTTAATTTCTTTCATTATTTCTCCCCTGACCGAGAG
ATCATTGAGTAGAGAGTTTTTCAGTTTTCATGAGTATGTGGATTTTCTGT
TGTTTATGTTGTTGTTAAAGTCCAAGTTTAATCCATGGTGGTCTGATAAG
ATGCAAAGGGTTATTTCAATGTTTTTTTTATCTGTTGAGGCTTGCTTTGT
GACTGAGTATATGGTCAGTTTTGGGGAATGTTTCATGAGGTGCTGAGAAG
AAAGTATGTTCTTTTGTATTTGGGTGAAATATTCTGTAGATATCTGTTAC
GTCTATTTGGCTTATAATATCTGTTAGTTCAATTATTTCTCCGTTTAGTA
GCTTCTTTTCAGATGACCGGCCCATTGGTGACAGTGGGAGGTTGAAGTCC
CCACTATTATTGTGCACGGTTTGATGTGTGATTTAAGCTCTAGTAATGTT
TCCTTCACAAATGTGAGTGTTTTTATATCTGAGGCATACATGTTCAGATT
CGACACGTCATCTTGGCGCATTTTTTTCCTTGATGACCTCGAAGTGTCTG
TTCCCATCTCTTTTTCCTTTACCCTTGCCCGAAACGCTATTCTATTTGAT
TTCGTAATGCCCCCTGCCGCTTGTTTCTTGCCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_a11.b1 MSMg01no087_a11.b1 CHROMAT_FILE:
MSMg01no087_a11.b1 PHD_FILE: MSMg01no087_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:59 2005
         (293 letters)



>mm_chr1_80571549_80572241
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccctgatgcaagtacagactggctctgccataccacactgccacaaattgctttgagt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtccctgatgcaaatacagactggctctgccataccacactgccacaaattgctttgagt 434

                                                                       
Query: 61  actgggcatagccatctaagagatgttattacacacagtgtctacctcttctgggacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 actgggcatagccatctaagagatgttattacacacagtgtctacctcttctgggacatg 374

                                                                       
Query: 121 gcaaaaatcctccttttactgacctaaaaatgaggatttcagaatgccgatagaatcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcaaaaatcctccttttactgacctaaaaatgaggatttcagaatgccgatagaatcaag 314

                                                                       
Query: 181 gtttcctgtaataaatgataactgggtcaaaacttctgacagggaatattaggctggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtttcctgtaataaatgataactgggtcaaaacttctgacagggaatattaggctggcca 254

                                                                
Query: 241 tctatcatgatatatgtccacaaatcactgtaatataaactataatgagaatt 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctatcatgatatatgtccacaaatcactgtaatataaactataatgagaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)