TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTGTACCTGGGTTTTAGTTGAGAATTTTTTAATTAGAGACTCT
ATCTCATAGTATAGTTATTTAAATTATTTGTGCATCCTAATTTAGTTTTG
GTAGGCCATATATAGCCACAAATGTATCTATTTCTTTTAAACTTTCCAGT
GTGATGGAATATGGATATTACATTTATAATCTGAATTTCCTCAGTATTTG
TTGTACTATCCTCTTTTCTTCTGTACCTTTATTGACATGGGTCCTCTCTT
TTATTACTACTTTTTGGCTAAATGTTTGTTAATCTTGTTTATTGGTTTTC
AAAGAACCAATTCTTCATTTCACTGAATCTTTGTATTTTTCTTCAGTGAT
ATTTCGGTAGTTTCAACCCTGATTTTGGTTAACTATTCTTGCCTACTCTT
TTGGTGTTTTTTTCTTCTTGGTTTCCCAAGGCTTTTAATAAATCATTAGC
ATTGTAATTTTAAATGTCTATAATACTTTCTGCCTAGACTTAGTGCTACA
ACTTTTTCTCTTAGAAATTGCTTTCACTGTATCATATAGGTTTTTTTATA
TTGCGTTATATCTTTGTTCAGTTCTAGGTAAATTTTTTTAGTGTGTTGTT
GTTTTTTCTTTTTCCAATTTTTTATGAGGTATTTTCTTCATTTACATTTC
A

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTTGATGGCTTTGCCTAGGCTCTATT
TTGTTTGTTTGTTTTAGGAGAGGGGCTTATATGATTATTTCTAAGGCACC
TCTTTACAATTGCTTTTTAAATTTTCTGAATGAGAGTTAGCTCCTATTTT
CAAAACAAAACAAAGCAAGAAAAGGAGTCATAGCTACTTCTAACAGTGCT
TCAAATTCCTCCAAACCTTCTCATATACTGCTCACTGTTCTCCTTCCCAT
TCATAGTCTCCTTTTATATCTGTTGTCATATGTACAAATGCATATGCATA
TACAGCTAGATTCCTGAGCATAACATGCGCAGTCTGTGCAACGTCACTTG
TAAATGTGATTCTAACAAATGTGACCATTTGTTATTGGATAATCAAATGA
TGTGTTCTCTGGGGAAGAGTATTTCTCTATCCCTTATTTGCCTATAGTTC
TTTGTGTAGGGTAAAAGTCTCTTTCCCACCCACCTACTTTGTCATGTATA
TTTCTGCTGTTCAGCTCATATTCAGACAGTCATATCGATGAGACCTCGGC
GTAGCTTTTAAAATTACTACGATACCCAATCTCACAGTAAATTCCCTGAT
CCTTTCATTTTTACAATCCTTCCATTAGCTTCTTCTGCCGTGTTCCCTAA
A

Query= MSMg01no087_e14.g1 MSMg01no087_e14.g1 CHROMAT_FILE:
MSMg01no087_e14.g1 PHD_FILE: MSMg01no087_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:21 2005
         (520 letters)



>mm_chr1_30427087_30428006
          Length = 920

 Score =  729 bits (377), Expect = 0.0
 Identities = 449/485 (92%), Gaps = 22/485 (4%)
 Strand = Plus / Minus

                                                                       
Query: 51  gggcttatatgattatttctaaggcacctctttacaattgctttttaaattttctgaatg 110
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gggc-tatatgattatttctaaggcacctctttacaattgctttttaaattttctgaatg 492

                                                                       
Query: 111 agagttagctcctattttcaaaac------------aaaacaaagcaagaaaaggagtca 158
           ||| ||||||||||||||||||||            ||||||||||||||||||||||||
Sbjct: 491 agaattagctcctattttcaaaacaaaacaaaacaaaaaacaaagcaagaaaaggagtca 432

                                                                       
Query: 159 tagctacttctaacagtgcttcaaattcctccaaaccttctcatatactgctcactgttc 218
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 431 tagctacttctaacagtgcttccaattcctccaaaccttctcatatactgctcactgttc 372

                                                                       
Query: 219 tccttcccattcatagtctccttttatatctgttgtcatatgtacaaatgcatatgcata 278
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 371 tccttcccattcatagtctccttttatatttgttgtcacatgtacaaatgcatatgcata 312

                                                                       
Query: 279 tacagctagattcctgagcataacatgcgcagtctgtgcaacgtcacttgtaaatgtgat 338
           |||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct: 311 tacagccagattcctaagcataacatgcccagcctgtgcaacgtcacttgtaaatgtgtt 252

                                                                       
Query: 339 tctaacaaatg---tgaccatttgttattggataatcaaatgatgtgttctctggggaag 395
           | ||      |   ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 251 ttta------gggctgaccatttgttattggataatcaactgatgtgttctctggggaag 198

                                                                       
Query: 396 agtatttctctatcccttatttgcctatagttctttgtgtagggtaaaagtctctttccc 455
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 197 agtatttctctatcccttatttgcctatagttctttgcgtagggtaaaagtctccttccc 138

                                                                       
Query: 456 acccacctactttgtcatgtatatttctgctgttcagctcatattcagacagtcatatcg 515
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 137 acccacctactttgtcatgtatatttctgctgttcagctcatatttagacagtcatatcg 78

                
Query: 516 atgag 520
           |||||
Sbjct: 77  atgag 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)