Query= MSMg01no087_g13.b1 MSMg01no087_g13.b1 CHROMAT_FILE:
MSMg01no087_g13.b1 PHD_FILE: MSMg01no087_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:31 2005
(457 letters)
>mm_chr1_101723355_101724211
Length = 857
Score = 868 bits (449), Expect = 0.0
Identities = 455/457 (99%)
Strand = Plus / Minus
Query: 1 caggtcatagggtatacatggagagcatatttgcccagaggcaaatcttaaaacagtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 caggtcatagggtatacatggagagcatatttgcccagaggcaaatcttaaaacagtaat 701
Query: 61 gaaagcattggtcagggttccgtttttaattaatataaataaagatagagagacaggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaaagcattggtcagggttccgtttttaattaatataaataaagatagagagacaggctg 641
Query: 121 gacataactttctcattaatttttgctctgtctctgcttttatacttgcttttgtttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gacataactttctcattaatttttgctctgtctctgcttttatacttgcttttgtttctc 581
Query: 181 tgcaccaagtcattacattctcaaacaaactgcctgaaatccaactgttctgtcttccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgcaccaagtcattacattctcaaacaaactgcctgaaatccaactgttctgtcttccct 521
Query: 241 aaagagaggtcagaaagccagagtacagaccacttagtttctggccccaagatcttttgc 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaggagaggtcagaaagccagagtacagaccacttagtttctggccccaagatcttttgc 461
Query: 301 tcttttcatctacaaagtcactcagagtccagggtacaattgttccctgaggataattta 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 460 tcttttcatctacaaagtcactcagagtccagggtacaattcttccctgaggataattta 401
Query: 361 catttctttactgcattatttcataatttgagttgggaggtttttcatctatttcataga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 catttctttactgcattatttcataatttgagttgggaggtttttcatctatttcataga 341
Query: 421 gcagttacttataattttaaaatgtctttgaaaagtg 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcagttacttataattttaaaatgtctttgaaaagtg 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no087_g13.g1 MSMg01no087_g13.g1 CHROMAT_FILE:
MSMg01no087_g13.g1 PHD_FILE: MSMg01no087_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:31 2005
(510 letters)
>mm_chr1_101567937_101568845
Length = 909
Score = 917 bits (474), Expect = 0.0
Identities = 501/510 (98%), Gaps = 1/510 (0%)
Strand = Plus / Plus
Query: 1 cataacagtgaggaagttcatcacagtggggagggcatggcagcaaaaccaggagcagct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataatagtgaggaagttcatcacagtggggagggcatggcagcaaaaccaggagcagct 260
Query: 61 gactacattcatctccattcaggaagcagagagtgatgaatgctgctgctcaattcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactacattcatctccattcaggaagcagagagtgatgaatgctgctgctcaattcattt 320
Query: 121 tcttcattttgtacagcctagcatccttgcctgtaaaataaactggtcaaatctagggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcattttgtacagcctagcatccttgcctgtaaaataaactggtcaaatctagggtg 380
Query: 181 aatcttcccactttcattcatcaataaaaactttctcacagacatgctgagaaatatttt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcttcccacttccattcatcaataaaaactttctcacagacatgctgagaaatatttt 440
Query: 241 cccaaagttattctagatcctgtcaattatacaagcagtattaactattataaaatgtca 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaaagttactctagatcctgtcaattatacaagcagtattaactattataaaatgtca 500
Query: 301 taattatagcataatacctgaaatatgagttactttccaaattatattggaagaacatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taattatagcataatacctgaaatatgagttactttccaaattatattggaagaacatat 560
Query: 361 tcctctttatttttcttggcctctcaacttcatactcattattttcttcttgattgaaag 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tcctctttatttttcttagcctctcaacttcatactcattattttcttcttgactgaaag 620
Query: 421 aataaagaactgatatctcaagatctagcacccccactgggtatatctcttgactatcat 480
|||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 621 aatagggaactgatatctcaagatctagcacccc-actgggtataactcttgactatcat 679
Query: 481 catcttctctcattaaagatctgaaaatat 510
||||||||||||||||||||||||||||||
Sbjct: 680 catcttctctcattaaagatctgaaaatat 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 909
Length adjustment: 10
Effective length of query: 500
Effective length of database: 899
Effective search space: 449500
Effective search space used: 449500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
