BAC Information

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BAC

Clone NameMSMg01-087I19
Chromosome1 (Build37)
Map Location 111,180,788 - 111,181,076
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087I19.T7 (MSMg01no087_i19.b1)MSMg01-087I19.TJ (MSMg01no087_i19.g1)
ACCAG306547AG306548
length523727
length of high quality
(start - end)
284 (46 - 329)68 (58 - 125)
definitionCHROMAT_FILE: MSMg01no087_i19.b1 PHD_FILE: MSMg01no087_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005CHROMAT_FILE: MSMg01no087_i19.g1 PHD_FILE: MSMg01no087_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTATTTCCAAGACCGCGGATTCTATCATTGCTTCATATTGTGCATTTA
GCTTTAAGTAAAGTATCTAACATTTAATTTAGTCCAAGTTCCTAGTATAG
AAGCATTGTCTGAAGAGACAAAGCCTTGAGATTTTAATTTAGTGTAGATT
AATTATTGTTTACACTACTGATCAGGCTAATAATAGTTCCTAGCTAATAT
TTTTTTTATGATCCATGGCTATAGTTAAGTTTATCAATCATCTCCTTACA
TAGGGCTAACAATGTAATAAGAAAGTCTTTTTTATTCTCTACTTCCTTAA
AAGATCCATAATCATACAATATTTATCAATCAGTACCAACTGGGAGCTAC
CCACATAGGAAATGGCATGCACTATCTTCACTGAGAAAAAAATCACTCAT
AAAAATAAGTATATACCCTTGTAAAAGTAAATGTGAACCTGAAATGATAC
TAGAGGTGATACAGCAATGGAATGGCCATTCATGCACTTTGGTGAATACT
TTGATGATTTTACTTGTTGGATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCATTTGGTTCTATACCCCATCTTTTGGTTGGGTTGTTTGTT
TGTGGCTTTTTTGTTTTTTGTTTTGTTTGTCTCGCTTGCACCAGCTGTTT
TAATCAGTCAAAAGATCCGTATCAATCGCCCTTCTCAATACCTACCCACC
CTGAATGTCTAACGCCACTAAAATTCACTATTTCCTATATACCCACCCCC
CCTTTATTCTCACATACTTATTTTAAACTCTTAATTTAATCTGCTCTTAT
CTTTTTATATACATACATTTTCCAAACCCATTAATTTCCTTTTACCTTAC
TTAACCCCACTTACCCCCGCCCTTTTTTCAATTACAATTTAATCCCTAAT
CCTTCTCAACCATTATATTATTTTTTATTCCCCTATTTTTTCCTCCACTA
ATATTTACCACACCACCCTATTACTTCGCACCTACTATAATAACATCCCT
ATGTTCCCATTATCATTTTACCGTATTAATCTCTCTTGTCCGCTACATTT
GCTCGGCGATATTTTATCTCCCCCCCCATTCTTTTTAGCTCATTATGTTT
TCACACGCCTCCCCGCCCCTTTTACTCCTACATTCTTTCTCCCTTACTCA
CCAAACCCCCAATCTCATCAGCTTTATTAATTACTATATTTCCCACATCT
CATTTGTGTTCCCTTCCTCCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_i19.b1 MSMg01no087_i19.b1 CHROMAT_FILE:
MSMg01no087_i19.b1 PHD_FILE: MSMg01no087_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:43 2005
         (284 letters)



>mm_chr1_111180588_111181276
          Length = 689

 Score =  482 bits (249), Expect = e-140
 Identities = 279/289 (96%), Gaps = 5/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttagctttaa-gt-aaagta-tctaacatttaa-tttagtcc-aagttcctagtatag 55
           |||||||||||| || |||||| |||||||||||| |||||||  |||||||||||||||
Sbjct: 201 atttagctttaaagttaaagtaatctaacatttaaatttagtcagaagttcctagtatag 260

                                                                       
Query: 56  aagcattgtctgaagagacaaagccttgagattttaatttagtgtagattaattattgtt 115
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 261 aagcattgtctgaagagacaaagccttgagattttaatttagtgtattttaattattgtt 320

                                                                       
Query: 116 tacactactgatcaggctaataatagttcctagctaatattttttttatgatccatggct 175
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tacactactgatcaggctaataatagttcctagctaatattttttttaagatccatggct 380

                                                                       
Query: 176 atagttaagtttatcaatcatctccttacatagggctaacaatgtaataagaaagtcttt 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 atagttaagtttatcaatcatctccttacatagggctaacaatgtaataagaaaatcttt 440

                                                            
Query: 236 tttattctctacttccttaaaagatccataatcatacaatatttatcaa 284
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttattctctacttccttaaaagatccataatcatacaatatttatcaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 689
Length adjustment: 9
Effective length of query: 275
Effective length of database: 680
Effective search space:   187000
Effective search space used:   187000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)