BAC Information

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BAC

Clone NameMSMg01-087O09
Chromosome1 (Build37)
Map Location 17,134,340 - 17,134,786
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
Downstream geneGdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087O09.T7 (MSMg01no087_o09.b1)MSMg01-087O09.TJ (MSMg01no087_o09.g1)
ACCAG306797AG306798
length660696
length of high quality
(start - end)
447 (28 - 474)546 (57 - 602)
definitionCHROMAT_FILE: MSMg01no087_o09.b1 PHD_FILE: MSMg01no087_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:11 2005CHROMAT_FILE: MSMg01no087_o09.g1 PHD_FILE: MSMg01no087_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCCAAGGGCTGTCCCCTTGCTGTAGGAAGCCCTTCT
TTTGTGGGGAAGGTGCACAGAGGACTGAGGGTCACGCTCTTCCTACTGGC
TGAGGATGAAGGCCCAAAATGATCCTGTCCAAGAAGCTCTGTTGCTTCTG
AGGCCCGTGCTCTCCTGTGCGGCCCCCTTCTGAGAGACCCCCTGAATAGA
AAATCAAGATAAAAATTCTTAAGAAGAGTGCTCTCTAGTTCGCATTTGCA
TTTGCCTGACTTCCACATACTGGTCATAGAACCCCTTTGTTATAGAGCAG
CTTTGTCATGGCACTAATCCTTGGCTACCCTGTCCACAGCGAGTCTTTGG
TCAGATCATGTCTTGGTCACATGATGCCGATGTCAGTGTGAATGAATGTC
TTCCTCTTTTTCCTTATATGTATATTATTTCCAAATCCTACCTGATTAGT
CTTTATGTGCATCTGCACTCCAGAACGGGACGTCAGACAATCTGAGCTGC
CATGTGCTTGCTGGAAATTTACCTTAGGACCTTTGGAAGAGCTCCTAACC
ACCAACTCATCTCTCCAGACTCATAAGGAGACTATTTTTAAGGCCTTGTG
AGAAGTATTTGCATTTCCTTTACTGTCTTATTTATCTACTCTGTTCTCAC
AAAAAGCCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGTCCTGACTTCCTTCAGTGATGGATTGCAAGCTATAAGATGA
AACAAACCCTTTCAACTCTCAGTTTCTTTCAGTTCTGGTTTTTCACCAAA
GCAACAGAAACTATAACTAGACAGGAATTGGTAGATTCCTGTCAGTGAGC
TACTACTGTGACAGGCCTGACAGGTTGTTTTCAGAGGACTGTGGAAGGAC
TTTGAAACTTTGACCTAGAAAGCATTGGGCATTCAGTGGGAATTAGAACT
CTTCTGTGGGAAATTAGAAAATAAACATGAGAAGACCAAACAATGAATGT
CTGGGTTGTGAAGGTTTGTAAGGAATTTTAAGAGTCTAGTAATTATTCTA
TGGTGCCATCTTGATATTTTTGTATAAAAATCTGGGGCTCTGCTCAGCTG
GAGCTGAAGAATCAGCCATGATTAACAAGAGGCCATCCACAGAAGCAAAA
CCTTCACTTTCTTGGACAGTTGGTGCTGATTAGCTGGAGCTAAGAGCATG
GTAGTTACTAAAAACAGCCCAACATCACTGAGGTAAATTCTGTAAGATAC
ATCCTCAGAGTCAGTATCAAGAGGCTGGATTTCAGAGGCAACTGTGATTG
GACCTCATGCTGTCAGCCCTACTTTTGGAAGTGAAGAGTCACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_o09.b1 MSMg01no087_o09.b1 CHROMAT_FILE:
MSMg01no087_o09.b1 PHD_FILE: MSMg01no087_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:11 2005
         (447 letters)



>mm_chr1_17134140_17134986
          Length = 847

 Score =  820 bits (424), Expect = 0.0
 Identities = 442/448 (98%), Gaps = 2/448 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccttgctgtagg-aagcccttcttttgtggggaaggtgcacagaggactgagggtcacg 59
           ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 201 cccttgctgtaggcaagcccttcttttgtggggaaggtacacagaggactgagggtca-g 259

                                                                       
Query: 60  ctcttcctactggctgaggatgaaggcccaaaatgatcctgtccaagaagctctgttgct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctcttcctactggctgaggatgaaggcccaaaatgatcctgtccaagaagctctgttgct 319

                                                                       
Query: 120 tctgaggcccgtgctctcctgtgcggcccccttctgagagaccccctgaatagaaaatca 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgaggcccgtgatctcctgtgcggcccccttctgagagaccccctgaatagaaaatca 379

                                                                       
Query: 180 agataaaaattcttaagaagagtgctctctagttcgcatttgcatttgcctgacttccac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agataaaaattcttaagaagagtgctctctagttcgcatttgcatttgcctgacttccac 439

                                                                       
Query: 240 atactggtcatagaacccctttgttatagagcagctttgtcatggcactaatccttggct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 440 atactggtcatagaacccctttgttatagagcagctttgtcatggcactaatccttggca 499

                                                                       
Query: 300 accctgtccacagcgagtctttggtcagatcatgtcttggtcacatgatgccgatgtcag 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 accctgtccacagtgagtctttggtcagatcatgtcttggtcacatgatgccgatgtcag 559

                                                                       
Query: 360 tgtgaatgaatgtcttcctctttttccttatatgtatattatttccaaatcctacctgat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgaatgaatgtcttcctctttttccttatatgtatattatttccaaatcctacctgat 619

                                       
Query: 420 tagtctttatgtgcatctgcactccaga 447
           ||||||||||||||||||||||||||||
Sbjct: 620 tagtctttatgtgcatctgcactccaga 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)