BAC Information

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BAC

Clone NameMSMg01-088A02
Chromosome1 (Build37)
Map Location 19,157,910 - 19,158,381
singlet/doubletsinglet
Overlap genenone
Upstream geneEG574082, EG654460, Defb17, LOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413
Downstream geneTcfap2b, LOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088A02.T7 (MSMg01no088_a02.b1)MSMg01-088A02.TJ (MSMg01no088_a02.g1)
ACCAG306874AG306875
length725752
length of high quality
(start - end)
470 (124 - 593)261 (132 - 392)
definitionCHROMAT_FILE: MSMg01no088_a02.b1 PHD_FILE: MSMg01no088_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:20 2005CHROMAT_FILE: MSMg01no088_a02.g1 PHD_FILE: MSMg01no088_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCAAAAANNNNCCCACCACCCCCCCAT
ACCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCCGCGGAATTCCTAACTTACGATATTATAGTAATACAGTAGAAGAGCT
TGAAATAAAATAAAAGAATATGATTTCATGTGTTTAGTTCCATTTTTCAA
TTTTATCATTATTGATGGCTTTAATTTCTTAAGTAAAATAAAGCAAAACC
AACATTCTTCCACAATTCCAAATTTCATCAGAAAATGAGTGATACTATGT
TACAAGTCTCCCACATTGTAAAATATGCACACAAAACAAAAATAATATTT
GAGTTTAGTAAGTGGTAGGAAAGTTACATCTAGATAATGTGGACTACTAT
ATCTGCAATGAAATTTCCACATTAATTGTTCTTTATCGCATTTATTATTA
ACAATACATTTGTATTTAATGTGGCATTTTAAGATGCATACTGCTAGGTA
CTTGATGCTATAACCATGGCAAATGTTCACAAATATTCAAATGGAACTCT
AGATCTGGCTTATGTTACAAGTCAACTTCTTCACCCTTAGTTGTAACTGG
CTTGGATTCAAAACACCTCAGAGGTGGTGTTATTTATTAGCCTTGAAACA
AAATGTAACTATAACTACAGTGCATATTATTTACCAGGATTGTGGGTGTT
TTAAGAGCCTTCATGAACAGCGTCN
NNNNNNNNNNNNNNNNNNNNNNCCCTTTTTTNCCCCCTTCNNCCCCCCCA
AACTTCCTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTTCCCCAGTACTGT
ATGTGCTGTTGGTATGTTTCCTGCCATGATGATAATGGACTAAACTTCTG
AAACCTTAAGCCAGCCCCAATTAAATATTTTTCCATATAAGAGTTGACAC
ACGGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCC
ACAAGGGCCCACACGGGACTCCCCACGGGATCCTAAGACCTCTGATGAGT
GGAACACAGCGCCTGCCCCAATCCAATGGTGCGGAACCTGATACTGCGGT
ACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCCCTTCC
GCTCCACTCGAGTCCCGGGCTACCTTGCCAGCAGAGTCTCACCCAACACC
CGCAAGGGCCAACACGGGACTCCCCACGGGATCCTAAAACTTCTGGTGAG
TGGAACACAGTGCCTGCCCCAATCCAGTCGCGCGGAACCTGAGACTGTGG
CACATAGGGAAGCAGGCTACCCAGGCCTGATCTGGGTCACAAGTCCCTTC
CGCCCGACTCAAGCCCCGGCCTACCTTTGCCTCAAAATCTTGCCCAAAAT
CCGCATGGGCCCTTCCCGCGATTCCAACTAGATCTTAATACCTTTGGTGA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_a02.b1 MSMg01no088_a02.b1 CHROMAT_FILE:
MSMg01no088_a02.b1 PHD_FILE: MSMg01no088_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:20 2005
         (470 letters)



>mm_chr1_19157710_19158581
          Length = 872

 Score =  897 bits (464), Expect = 0.0
 Identities = 470/472 (99%), Gaps = 2/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattatagtaatacagtagaagagcttgaaataaaa-taaaagaat-atgatttcatgt 58
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 201 atattatagtaatacagtagaagagcttgaaataaaaataaaagaattatgatttcatgt 260

                                                                       
Query: 59  gtttagttccatttttcaattttatcattattgatggctttaatttcttaagtaaaataa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttagttccatttttcaattttatcattattgatggctttaatttcttaagtaaaataa 320

                                                                       
Query: 119 agcaaaaccaacattcttccacaattccaaatttcatcagaaaatgagtgatactatgtt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaaaaccaacattcttccacaattccaaatttcatcagaaaatgagtgatactatgtt 380

                                                                       
Query: 179 acaagtctcccacattgtaaaatatgcacacaaaacaaaaataatatttgagtttagtaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagtctcccacattgtaaaatatgcacacaaaacaaaaataatatttgagtttagtaa 440

                                                                       
Query: 239 gtggtaggaaagttacatctagataatgtggactactatatctgcaatgaaatttccaca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggtaggaaagttacatctagataatgtggactactatatctgcaatgaaatttccaca 500

                                                                       
Query: 299 ttaattgttctttatcgcatttattattaacaatacatttgtatttaatgtggcatttta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaattgttctttatcgcatttattattaacaatacatttgtatttaatgtggcatttta 560

                                                                       
Query: 359 agatgcatactgctaggtacttgatgctataaccatggcaaatgttcacaaatattcaaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgcatactgctaggtacttgatgctataaccatggcaaatgttcacaaatattcaaa 620

                                                               
Query: 419 tggaactctagatctggcttatgttacaagtcaacttcttcacccttagttg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaactctagatctggcttatgttacaagtcaacttcttcacccttagttg 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 872
Length adjustment: 10
Effective length of query: 460
Effective length of database: 862
Effective search space:   396520
Effective search space used:   396520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)