BAC Information

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BAC

Clone NameMSMg01-088G12
Chromosome1 (Build37)
Map Location 45,500,445 - 45,501,038
singlet/doubletsinglet
Overlap geneCol5a2
Upstream geneTxn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
Downstream geneEG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088G12.T7 (MSMg01no088_g12.b1)MSMg01-088G12.TJ (MSMg01no088_g12.g1)
ACCAG307171AG307172
length673761
length of high quality
(start - end)
595 (53 - 647)244 (123 - 366)
definitionCHROMAT_FILE: MSMg01no088_g12.b1 PHD_FILE: MSMg01no088_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:52 2005CHROMAT_FILE: MSMg01no088_g12.g1 PHD_FILE: MSMg01no088_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTTCCAAAAGAGGACCGCGGAATTCAGCTTCCC
CTATACTGGGAGAAGTTTCCAAGAATACAATATGGGTGTCGGAGAATTGT
TTTAAACATTAAGTGAAAATGAAATAACCATTTTCTGTCTCTTGGATTAG
GTTTCCATTACCCATACCAAACAAATATATAGGATACCATATCTATATAG
TTTCTGTTAAACTGTAAAAGAGGCCCTGACTAAGACAAATTGGTACCAGC
AGAGTGAAGTATTCCTGTGACAACCTGACCATGTTTACGGGAGGACTGTG
GAAGGACTTTGGAACTTTGGGCTTGAAGATTCATTCATTGTTAAGAGCTC
TGTCAGATGTTGTGTAGGAGCTTGGAAGATAATGTTGAGAACAGTGCAGA
AGATGGAGGTCTGGTTTGTGAAATTTCAGAGGGAAAATTAAAGACTCTTT
TCAGGGCCATTGATGCTTTTTTTTCTTTTTTTTTTTATTATTAGGTATTT
TCCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCC
CCCAATCTCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTG
TACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGA
TGGCCGACTAGGCCATCTTTTGA
NNNNNNNNNNNNNNNNNNNCCCCCCCNCCCCCCCTNNNCCCNTACATCCN
NNNNTCGATGCAGTGGGTGGCCTGGCGGCCGCCTGTCCAAACAAGGTAGG
TGACCTATAGATTTCCAGCGGAATTCATCTTCTTCGTGAACCCGGCCAAG
GGCGTCTAGGGCCCCAGAGGACTCTCTCTGCTGCAGGACCCCTAGCACAC
CCAGGACCTCGTGATCACCTGGGAGCACATGGGCAACAGAAGCAACAGAG
CTTCCTGGACAGGGTCCCGTCAGGCCTTCATCCTCAGCCAAGAGGCAGAG
CTGAGACCCAGACACCTGGGCACCTTCCTTGCCAGAGGAGAGTTGGCCTA
CAAGGAGGGCTCTGACCCTTTTTACTCAGGAGGTGGATTAGAGCTCCAGA
CTTCTGGACATCTGCTTTGCAAGACGAGAGCTTGCCTGCAGAGTGCTCTT
ACCACTGGAACTCAGGCGAGAGTTAGACTCCCAGGAGTGCTGACAGAGGC
TAACAGAATCACAGGAGGTTCAAGCTCCAGCCAGAGACAGCATGAATATT
AACACCAGATATTTCCAGATGGCCAAAGGCAAAGGTAAGATTCTTACTAA
CAGAAACCAAGAACACTGGGCATCATCAGAACCCAGTACATCCACCACAG
CCAGTCCTGGATACCCCAACATACCCATGATTCCTTAATAACTCCCGAAT
GGTTGACATAGAAAAAGCACTCTTCATGCACAGTGGCACATAACCCTCCC
TGTTGTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_g12.b1 MSMg01no088_g12.b1 CHROMAT_FILE:
MSMg01no088_g12.b1 PHD_FILE: MSMg01no088_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:52 2005
         (595 letters)



>mm_chr1_45500245_45501240
          Length = 996

 Score = 1064 bits (550), Expect = 0.0
 Identities = 584/596 (97%), Gaps = 3/596 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactgggagaagtttc-caagaatacaatatgggtgtcggagaattgttttaaacatta 59
           ||||| |||||||||||  |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 atacttggagaagtttcgaaagaatacaatatgggtgtcagagaattgttttaaacatta 260

                                                                       
Query: 60  agtgaaaatgaaataaccattttctgtctcttggattaggtttccattacccataccaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgaaaatgaaataaccattttctgtctcttggattaggtttccattacccataccaaa 320

                                                                       
Query: 120 caaatatataggataccatatctatatagtttctgttaaactgtaaaagaggccctgact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 caaatatataggataccatatctatatagtttctgttaaactgtaaaagagaccctgact 380

                                                                       
Query: 180 aagacaaattggtaccagcagagtgaagtattcctgtgacaacctgaccatgtttacggg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 381 aagacaaattggtaccagcagagtgaagtattcctgtgacaacctgaccatgttttgggg 440

                                                                       
Query: 240 aggactgtggaaggactttggaactttgggcttgaagattcattcattgttaagagctct 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aggactgtggaaggactttggaactttgggcttgaagatccattcattgttaagagctct 500

                                                                       
Query: 300 gtcagatgttgtgtaggagcttggaagataatgttgagaacagtgcagaagatggaggtc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcagatgttgtgtaggagcttggaagataatgttgagaacagtgcagaagatggaggtc 560

                                                                       
Query: 360 tggtttgtgaaatttcagagggaaaattaaagactcttttcagggccattgatgcttttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tggtttgtgaaatttcagagggaaaattaaagactcttttcagggccattgctgcttttt 620

                                                                       
Query: 420 tttctttttttttttattattaggtattttcctcgtttacattttcaatgctatcccaaa 479
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcttttttttt--attattaggtattttcctcgtttacattttcaatgctatcccaaa 678

                                                                       
Query: 480 ggtcccccatacccacccccccaatctcctacccacccactccccctttttggccctggc 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 679 ggtcccccatacccacccccccaatctcctacccacccactccccctttttgaccctggc 738

                                                                   
Query: 540 gttcccctgtactggggcatataaagtttgcaagtccaatgggcctctctttgcag 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gttcccctgtactggggcatataaagtttgcaagtccaatgggcctctctttgcag 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 996
Length adjustment: 10
Effective length of query: 585
Effective length of database: 986
Effective search space:   576810
Effective search space used:   576810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)