Query= MSMg01no088_o13.b1 MSMg01no088_o13.b1 CHROMAT_FILE:
MSMg01no088_o13.b1 PHD_FILE: MSMg01no088_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:32 2005
(189 letters)
>mm_chr1_29205727_29206315
Length = 589
Score = 358 bits (185), Expect = e-103
Identities = 188/189 (99%)
Strand = Plus / Minus
Query: 1 ttaaataaactcacagaaatggtatgaaaaatgatgattctgtaagtacaaaaatataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttaaataaactcacagaaatggtatgaaaaatgatgattctgtaagtacaaaaatataac 330
Query: 61 tggttcatatagggaccggaaaggtggagggtactatttctgtaggctagatcaaggatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tggttcatatagggaccggaaaggtggagggtactatttctgtaggctagatcaaggatc 270
Query: 121 taattcaggaatagaatggagacatttttagaagagaacttttgggattcagctgtcaaa 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taattcagggatagaatggagacatttttagaagagaacttttgggattcagctgtcaaa 210
Query: 181 catgttaaa 189
|||||||||
Sbjct: 209 catgttaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no088_o13.g1 MSMg01no088_o13.g1 CHROMAT_FILE:
MSMg01no088_o13.g1 PHD_FILE: MSMg01no088_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:32 2005
(589 letters)
>mm_chr1_29115599_29116588
Length = 990
Score = 1071 bits (554), Expect = 0.0
Identities = 581/590 (98%), Gaps = 1/590 (0%)
Strand = Plus / Plus
Query: 1 catttgag-ataatttctattagagagtaactaagagaatttaacctctccttgtaataa 59
|||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 catttgagtataatttttattagagagtaactaagagaatttaagttttccttgtaataa 260
Query: 60 cagaaagtgtatgcataattgttatctctctttaccactgacattctttcaccctatcag 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaagtgtaagcataattgttatctctctttaccactgacattctttcaccctatcag 320
Query: 120 tgctatatacatagaaatcaagttattaaactgtaggaaaatatcatgtgagcttttaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctatatacatagaaatcaagttattaaactgtaggaaaatatcatgtgagcttttaac 380
Query: 180 atttccagtgtcagccttcccttttgttctatttaaaataatagaaaacatctcctccaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttccagtgtcagccttcccttttgttctatttaaaataatagaaaacatctcctccaa 440
Query: 240 atctcaaagaagcaaagaataatcctaaaacaaggctttgtatcaaaaatttctatctaa 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 atctcaaagaagcaaagaataatcctaaaacaaggctttgtatcgaaaatttctatctaa 500
Query: 300 attaatggtttgaacatttcttcaatctgcttagatattatctccagtcttgttatttca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaatggtttgaacatttcttcaatctgcttagatattatctccagtcttgttatttca 560
Query: 360 gcttttctttagacaacgaatataaaataccagtacctcacatgtcttctttatttgttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttttctttagacaacgaatataaaataccagtacctcacatgtcttctttatttgttt 620
Query: 420 gaacacatattgccatgagctgctgctgtgttccttttccaaagagctgcacagagtgca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacacatattgccatgagctgctgctgtgttccttttccaaagagctgcacagagtgca 680
Query: 480 tactcattcctgaaatcaccagtagctacagaccaaacaagaattccatccaagtaaagg 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tactcattcctgaaatcaccagtagctacagagcaaacaagaattccatccaagtaaagg 740
Query: 540 gtgataaatcaatgagagttttggatgagttatagtagaagaaatgactt 589
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 gtgataaatcaatgagagttttggatgagttatagtagaagacatgactt 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
