BAC Information

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BAC

Clone NameMSMg01-089H18
Chromosome1 (Build37)
Map Location 187,289,996 - 187,290,280
singlet/doubletsinglet
Overlap geneSlc30a10
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138
Downstream gene5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089H18.T7 (MSMg01no089_h18.b1)MSMg01-089H18.TJ (MSMg01no089_h18.g1)
ACCAG307971AG307972
length673701
length of high quality
(start - end)
245 (49 - 293)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no089_h18.b1 PHD_FILE: MSMg01no089_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:18 2005CHROMAT_FILE: MSMg01no089_h18.g1 PHD_FILE: MSMg01no089_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCATATTTCCGAGCAGGGCGGAATCAGTCTTCATCACAAGAAAATTG
GATGAAGACATAGAACTCTCAGGTCTGGCTGAGCCATGCCTGCCTGGCCA
CTGCCTTGCTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTGTAA
GCCAGCCCCAATTAAATGTTGTTTTTTTATAAGACTTGCCTTGGTCATGG
TATCTGCTCACAGCAGTAAAACCCTAACTAATACAACTACACATTCAACA
TACACACTGTCAGACTGTAAGTACTGCCATTGCTAGAAAGTCTCATCTTC
CCTTTTCCACATGTGAAATTCAAGTTTTGTATTCTATTTTTATTCCCCCC
CACGCACAAATAAAATATTGCATATATGTATTTTGCTTGGCTGCTAGACT
TTAAATAACATCTATTGAACAATAGGATTCATTACGACACGTTCACACAT
CAAGAGCTTTGCTCCTATTCACCTATCATCATTGCCTATTCTCCTGTCTT
CTTATCTACAACCCATCCCCGTAGTTCCACTTCAACTTTTGACATACACA
AATATCAAGAAATACATCACACTTGTAGGCAGGTGATAGACAGACTTGAG
AGCCCCCAGAAGAGGAAACGCGGCATTTGTCTAATGTTTTTTTATTTAAT
TAACATGATAATCCATCCCCACC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCAGAAAATACAAAACCAGCCCAGGCAAAATGGTGCGAC
TCAGGGTGTTTTGTTTTGTGTTTTTAATATTAGTCTTAAATTTGGAGGCT
GATGGGCAGCTGTGATCTGGGTTATTGGGAAATCTTTGTTCCTTAGAAGT
TGATTAGATCTAAACCAACCACCCATAAGTAAATAGAAAAATATCTAAAG
CCTTTCTAATTCCCAGAAGTTTATTGTGTTAGATTATGTATGCACTTTAT
AAGCCAGAGGAGGAAAAAAGATTATTCTCTACTTTAGGCACCAAACCTGT
GAAGTAGACTTACTGGTACCACACGATTCCCCAGGAAGCCCAGCGTGGTG
ATGTGCATGCAGATGCTGCTGCCGTGCCAACTCTGTTCCATGCCTTAGTT
GAAGCCAAAGTAGAAATTTGTCTCTAATGTCCAAATCTCAATTCACTGTG
CCTTATTCTTAAAGGACAAGAATGATAATTTTACAGTTTCTCCTACTAGC
TAGAGGAATGCATTTTAGTTTGCATTGTAAATAACTTCCTTTAATTTCTG
AAGTACTTTTTCTTTTATGCAAAGAAAGTACACTTACTTCCCACATAATT
AATTTTAACCTTGATTTGATTCTCCCCTAGCAAATTTATAGACGGGACCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_h18.g1 MSMg01no089_h18.g1 CHROMAT_FILE:
MSMg01no089_h18.g1 PHD_FILE: MSMg01no089_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:18 2005
         (284 letters)



>mm_chr1_187289796_187290480
          Length = 685

 Score =  518 bits (268), Expect = e-151
 Identities = 281/286 (98%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccagcccaggcaaaatggtgcgactcagggtgttttgttttgtgtttttaatattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccagcccaggcaaaatggtgcgactcagggtgttttgttttgtgtttttaatattagt 260

                                                                       
Query: 61  cttaaatttggaggctgatgggcagctgtgatctgggttattgggaaatctttgttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaaatttggaggctgatgggcagctgtgatctgggttattgggaaatctttgttcctt 320

                                                                       
Query: 121 agaagttgattagatctaaaccaaccacccataagtaaatagaaaaatatctaaagcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagttgattagatctaaaccaaccacccataagtaaatagaaaaatatctaaagcctt 380

                                                                       
Query: 181 tctaattcccagaagtttattgtgttagattatgtatgcactttataagccagaggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaattcccagaagtttattgtgttagattatgtatgcactttataagccagaggagga 440

                                                         
Query: 241 aaaaagatta--ttctctactttaggcaccaaacctgtgaagtaga 284
           |||||||  |  || |||||||||||||||||||||||||||||||
Sbjct: 441 aaaaagacaaagtt-tctactttaggcaccaaacctgtgaagtaga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)