Query= MSMg01no089_n20.b1 MSMg01no089_n20.b1 CHROMAT_FILE:
MSMg01no089_n20.b1 PHD_FILE: MSMg01no089_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:49 2005
(303 letters)
>mm_chr1_131005054_131005756
Length = 703
Score = 406 bits (210), Expect = e-118
Identities = 270/304 (88%), Gaps = 24/304 (7%)
Strand = Plus / Plus
Query: 1 gacatttttac-aaaatcaaggtggatacctgagaaaagacagctcagatgttctgtgct 59
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 223 gacatttttacaaaaatcaaggtggatacctgagaaaagacagctcagatgttctgtggt 282
Query: 60 ctacacacacccacacacacacacacacacacacacacacacacacacacacacacacac 119
|||||||||||||| | | | | | | | | | |||||||
Sbjct: 283 ctacacacacccac---------------------cccccccccccccccccccacacac 321
Query: 120 acataccacattcacacacatccaagaagaaaggatgtaccctctaaatacatagtgtaa 179
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ac--accacattcacacacatccaagaagaaaggatgtaccctctaaatacatagtgtaa 379
Query: 180 gaatagccgatacagagaaaatcttttgtgacagtttccatgtatggactctctttaatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaatagccgatacagagaaaatcttttgtgacagtttccatgtatggactctctttaatc 439
Query: 240 atcaggtttatatgatcacatttatgttctctagtgggacaaagaaaacagaaaactttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atcaggtttatatgatcacatttatgttctctagtgggacaaagaaaacagaaaactttt 499
Query: 300 tgcg 303
||||
Sbjct: 500 tgcg 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_n20.g1 MSMg01no089_n20.g1 CHROMAT_FILE:
MSMg01no089_n20.g1 PHD_FILE: MSMg01no089_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:49 2005
(509 letters)
>mm_chr1_131148744_131149652
Length = 909
Score = 766 bits (396), Expect = 0.0
Identities = 432/464 (93%), Gaps = 31/464 (6%)
Strand = Plus / Minus
Query: 77 gtatgctcgggttatcatatgtatttccattatggattctaaaacatataaacaaaatac 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 gtatgctcgggttatcatatgtatttccattatggattctaaaacatataaacaaaatac 850
Query: 137 ttgaaattccgtgggttacttgatacctttcctccattgggaagccttccagaatgaccc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttgaaattccgtgggttacttgatacctttcctccattgggaagccttccagaatgaccc 790
Query: 197 aaagtcgtctctcttcctatacagaaaacat----------------------------- 227
||||||||||||||||||||||||||| |||
Sbjct: 789 aaagtcgtctctcttcctatacagaaagcatatatatatatatgcaaatatatatatata 730
Query: 228 --atatatatatatatatatttgcatttgttagttaagtagaagcttctgggtgtgcaga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aaatatatatatatatatatttgcatttgttagttaagtagaagcttctgggtgtgcaga 670
Query: 286 atcctcacactcccttacaccacttgagatttacattttctaagagtccagatggcatct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atcctcacactcccttacaccacttgagatttacattttctaagagtccagatggcatct 610
Query: 346 atgtgggaactaaagtgtgagaagcccttgctatatcagctattgaagagtttctttcaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgtgggaactaaagtgtgagaagcccttgctatatcagctattgaagagtttctttcaa 550
Query: 406 atcacatccccaaacttaattctttatttttaacactttcatgcttcgatctttagtgct 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atcacatccccaaacttaattctttatttttaacactttcatgcttcgatctttagtgct 490
Query: 466 ttgccttcagtgtatgtgtgtagttatgtgaatgtgaaggcaga 509
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttgccttcagtgtatgtgtgtagttatgtgaatgtgaaggcaga 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
