BAC Information

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BAC

Clone NameMSMg01-090D10
Chromosome1 (Build37)
Map Location 58,463,898 - 58,622,763
singlet/doubletdoublet
Overlap geneClk1, Ppil3, Nif3l1, Orc2l, BC049806
Upstream gene9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1
Downstream geneNdufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090D10.T7 (MSMg01no090_d10.b1)MSMg01-090D10.TJ (MSMg01no090_d10.g1)
ACCAG308504AG308505
length709700
length of high quality
(start - end)
383 (33 - 415)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no090_d10.b1 PHD_FILE: MSMg01no090_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:18 2005CHROMAT_FILE: MSMg01no090_d10.g1 PHD_FILE: MSMg01no090_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,463,898 - 58,464,265)(58,622,474 - 58,622,763)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CCTAACTTGGCCCCAGTTTCTAAGGCCTTTAGTGTCTTGGATATTCTACT
GTGTGTTTAGAACTGTTAAGTGTCACCTTATTCTGGGATTATTGTCCTAG
AAATATTCTGTTCTTATAAAATTTTCAGATACCAAAATGCCACATACTTT
ACTCAGCATAATGATTGATGGTGAGGGGAAATGCATGTGACCAAGTAATT
AACTTATAACAGTGTTCAAGCTTTTTCCATTATCCAAACCCCCCAGAAAC
CTTTTCCCCTAATAGCACCCCAATAAATTTTAATATAGATATACTACGTA
CTGTGTCTGTGCTTTATACATGAAACACTTTTTTTGTATCCCGTAGAAGT
TTTTTGGTTTTTCCACACAGGGTTTCTCTGTATAGCCCTTGGCTGCCCTG
GACTCACTTTGTAGACCATGCTGGCCTACAACTCACAAGTTCTCCTGCCT
CTGCCTCCCGAGTGCTGTTATTAAAGGTGTGTGACACCATGCCCGGGCTC
CGTAAAAGTTTTAACCAGGCACTTTTTCCTTACGGTTATAAGTTGGTTAT
ACATCCCCTCTCAGATTCTTTTTGTTTTCGACTCCCATTTTGTCTCATCC
CTCCTCTTCGTATTCCTTTCTTTTTCACGACTTTCCGCATTATCCCTTGA
ATATCTCCC
CGATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACACTTGAACTCTGCCGCATTCCTGTG
CCACCTCCTCCTTTAGAAAACTGATCCTAAGACAGGTAAAATTATGACCT
TAACTTAAAAAAAAAAAGATGAAGAATACATTTCCCATATGATTAAACAT
GTTAAGAATTTTTGGTAGTCTTTGGTAAGTAGCTTTATTTATTAAGCAGT
TTTATCTTACGTGATCACCTCTTTCTGTCTTTGAATTCAGTTTTGAATTA
TTTTAGTAGTTACATTTAAGAAATATGTTATCTGAATTTTACTTTGATTT
AGTTCATTTATTCTGCATGACTGCGACCTCAGGGTCCATCTGGATAACTG
TTGGCCAAAGCAACTTTTGTGACTGACGACTGTGTTCTCTTTCTGTTATA
ATAATCACATGTAGATTCTGATTATTTGAGATATGGCAAATAAACTGCTC
TTTCTAGTGTTTATTAATAATGTACAAATATGCAAAGTCAAAGCCAGGTG
TTGTTTTATGCCTGTAATCCTACTACCTAGGAGGTAGAGACAGGATGATC
AGGACGTCAATTTCAGGTCATCCCTTAGCCACAGGGACTAGAAGAGAAAA
GAGAGCCCAAAAAACTACTTCTTCCCAATTCTATTTCCGCTTTACCGCAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_d10.b1 MSMg01no090_d10.b1 CHROMAT_FILE:
MSMg01no090_d10.b1 PHD_FILE: MSMg01no090_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:18 2005
         (383 letters)



>mm_chr1_58463685_58464467
          Length = 783

 Score =  688 bits (356), Expect = 0.0
 Identities = 365/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattcctaacttggccccagtttctaaggcctttagtgtcttggatattctactgtgtg 73
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcctaacttggtgtcagtttctaaggcctttagtgtcttggatattctactgtgtg 273

                                                                       
Query: 74  tttagaactgttaagtgtcaccttattctgggattattgtcctagaaatattctgttctt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttagaactgttaagtgtcaccttattctgggattattgtcctagaaatattctgttctt 333

                                                                       
Query: 134 ataaaattttcagataccaaaatgccacatactttactcagcataatgattgatggtgag 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ataaaattttcagataccaaaatgccacatactttactcagcataatgattgatggtgag 393

                                                                       
Query: 194 gggaaatgcatgtgaccaagtaattaacttataacagtgttcaagctttttccattatcc 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gggaaatgcatgtgaccaagtaattaacttataacagtgttcaagctttttccattatcc 453

                                                                       
Query: 254 aaaccccccagaaaccttttcccctaatagcaccccaataaattttaatatagatatact 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaaccccccagaaaccttttcccctaatagcaccccaataaattttaatatagatatact 513

                                                                       
Query: 314 acgtactgtgtctgtgctttatacatgaaacactttttttgtatcccgtagaagtttttt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acgtactgtgtctgtgctttatacatgaaacactttttttgtatcccgtagaagtttttt 573

                   
Query: 374 ggtttttc 381
           ||||||||
Sbjct: 574 ggtttttc 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no090_d10.g1 MSMg01no090_d10.g1 CHROMAT_FILE:
MSMg01no090_d10.g1 PHD_FILE: MSMg01no090_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:18 2005
         (290 letters)



>mm_chr1_58622274_58622963
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacttgaactctgccgcattcctgtgccacctcctcctttagaaaactgatcctaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cacacttgaactctgccgcattcctgtgccacctcctcctttagaaaactgatcctaaga 431

                                                                       
Query: 61  caggtaaaattatgaccttaacttaaaaaaaaaaagatgaagaatacatttcccatatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caggtaaaattatgaccttaacttaaaaaaaaaaagatgaagaatacatttcccatatga 371

                                                                       
Query: 121 ttaaacatgttaagaatttttggtagtctttggtaagtagctttatttattaagcagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 370 ttaaacatgttaagaatttttggtagtctttggtaagtagctttatttattaaacagttt 311

                                                                       
Query: 181 tatcttacgtgatcacctctttctgtctttgaattcagttttgaattattttagtagtta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 310 tatcttacgtgatcacctctttctgtctttgaattcagttttgaattattttagtaatta 251

                                                             
Query: 241 catttaagaaatatgttatctgaattttactttgatttagttcatttatt 290
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 250 catttaagaaatatgttatctgaattttactttgatttatttcatttatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)