BAC Information

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BAC

Clone NameMSMg01-090E07
Chromosome1 (Build37)
Map Location 46,929,084 - 46,929,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
Downstream geneEG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090E07.T7 (MSMg01no090_e07.b1)MSMg01-090E07.TJ (MSMg01no090_e07.g1)
ACCAG308545AG308546
length706712
length of high quality
(start - end)
313 (44 - 356)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no090_e07.b1 PHD_FILE: MSMg01no090_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:22 2005CHROMAT_FILE: MSMg01no090_e07.g1 PHD_FILE: MSMg01no090_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTGGAGTGAAGGTCAAGTGCAAAGTGTGGTCCCAAGCTACTCTTCT
TCTTCTATCCAATTCTAACATCTTATCTTCTAATACCAGCTCGGTTCCCT
GGATTTATCTTTTTCCCTGGAGTCTGGGTCCCTATCTCAGTGAAACTTTG
GTCTCTTCATCTGCTGATATGGAGAGAGTGTGTTTTATTTTGAAACTTCT
CATTATCTTTGATGTGATCACATTTACTCATCCCTCAGTAAGTAGCATGA
GTCTCCTTTACATGTGAGCCTAAAACACATCAGCTTTTGGTTTTAAAATC
ACTATACATTATACAACCCCCAGCTTATATGTTTACAGGCTTTTTTTCCC
CCTCAGAACTACTCTATAAATATAGTAGACTAAATTCTTTTTGTAAAAAT
AGGAACATAGGTCTTGAAAGGAATAGACAACTAGGGATCATTTCTTTCTT
ATTAGATAGTTTCTTTATTTACATTTCAAATGTTATCCCTTTTCTTTGAT
TCCCCTCCAAAAACCCCCTATCCCTCACCCCTCCCCCTGCTCACCAACCC
ACCCATTTCTGCTTCCTGGCCCTGGCAGACCCCTATTCTGGGGCATAGAA
CCTTCACAGGATCCAGGGCCCTCTCCTCCTATAGGGACCATTTCTGCTTT
TTCACC
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTGCAGGAGGATCC
TGCAATACCTCTCCTGGGCACTTATCCACAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATCTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGAACTACTCAGCTATTAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGGAACACATTCACAAAGGAACTCCCACAATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATACAATTTGCT
AAACACATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_e07.b1 MSMg01no090_e07.b1 CHROMAT_FILE:
MSMg01no090_e07.b1 PHD_FILE: MSMg01no090_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:22 2005
         (313 letters)



>mm_chr1_46928881_46929594
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttggagtg-aaggtcaagtgcaaagtgtggtcccaagctactcttcttcttc 62
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattccttggagtgtaaggtcaagtgcaaagtgtggtcccaagctactcttcttcttc 455

                                                                       
Query: 63  tatccaattctaacatcttatcttctaataccagctcggttccctggatttatctttttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatccaattctaacatcttatcttctaataccagctcggttccctggatttatctttttc 395

                                                                       
Query: 123 cctggagtctgggtccctatctcagtgaaactttggtctcttcatctgctgatatggaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cctggagtctgggtccctatctcagtgaaactttggtctcttcatctgctgatatggaga 335

                                                                       
Query: 183 gagtgtgttttattttgaaacttctcattatctttgatgtgatcacatttactcatccct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gagtgtgttttattttgaaacttctcattatctttgatgtgatcacatttactcatccct 275

                                                                       
Query: 243 cagtaagtagcatgagtctcctttacatgtgagcctaaaacacatcagcttttggtttta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagtaagtagcatgagtctcctttacatgtgagcctaaaacacatcagcttttggtttta 215

                      
Query: 303 aaatcactata 313
           |||||||||||
Sbjct: 214 aaatcactata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)