BAC Information

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BAC

Clone NameMSMg01-090H10
Chromosome1 (Build37)
Map Location 22,947,111 - 22,947,423
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnq5, LOC435612, LOC100040338, Rims1, Rims1, EG665725
Downstream geneLOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090H10.T7 (MSMg01no090_h10.b1)MSMg01-090H10.TJ (MSMg01no090_h10.g1)
ACCAG308686AG308687
length737703
length of high quality
(start - end)
317 (41 - 357)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no090_h10.b1 PHD_FILE: MSMg01no090_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:38 2005CHROMAT_FILE: MSMg01no090_h10.g1 PHD_FILE: MSMg01no090_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAAAGCATCTACGAGCCTCTTTGGTTTGGGTTTAGGATTTCTTTCTTTCT
TTTTTCTTTTTCTTTTTTACCATAGTGTATCAAGCGGAAAAAAATACCAG
AGACTCACATCCAGATAAGATAAGCTTATGCGGAAATTAAAGAATTTCAC
ACGAGGCATCTCCTCGGAGAATTAGTTGCTTGCTTAGACATACACAGGGC
ATGCCTCTCTACTGGGCAGGTCTACTGAGAGTAACACAGGGTCGTTTTGA
TTTGAATTTTTCCTGGCGGTCCTGTGAAGGCTTGATGCCCCAGTATAGGG
GAAGGTGAGTGTATGGAGGCCCCCCCCCCCCTCCTTCCTCTCTGTTTTCT
TTTTCACTGTGGTGCCCCCCAAAACAAAAATAAAACCCTTGTCGTGGTGG
GGGTTCTTTTCCACTTTTTTTACTTCCTTCTTTCATCTCGCCCCTTTTCT
TACCATCTCTTCGTTTCTCCCCTCACATTTTCTTCTGTCCTTTCTTAGTG
TTTCCTCCTCTTCATTCTATTGTACCTATGTACCATCATTGTTCTGCCTA
AAGCACTTTCGTCTCCTTTTCTTCTTCCTTTTTCTTCGCTTTTTTCTTTT
GTGCGGTACCACTCTGATTCGCTTCTCTCCTATTTCACCTCCCTTTATTC
CTCGCCCTATCACCGTTTCCCCGCTGTCTTCTTTCCC
CACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTGCAAGATTTCTTGGTTGACAA
TTTGTCATCTACATTTATCAAAGAAATTGGTTTTATAGTTTCCTTTTCTT
TGATGTCCCTACTTGGTTTTGATATCAGAGAAATGCAGGCATGGTAGAAT
ATGGCTGGTATTATTCCTTCAGTACCTTACTGAATCATTGGGAGATGTTA
GATAGATGTCAGCTCTTCAAATGTTGATAGTCAACCTCCTAGGTTCACAG
ATGCCCTTATTGGTAGACTTTTCATTACTATTCAACCTCTTGTTATGAAT
CTGACTAAGTTGTTTATATCTTGCTTACCTTTTGTAGCTACTTGACTCTA
GCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCACTGGAAAAAGAG
GCCCACTGGACTTGCAAACTTTATATGCCCCAGTACAGGGAAACGCCAGG
GCCAAAAAGTGTGAGTGGGCGGTTAGGTTATCTTTCCAACCATTTCTTCT
TTTCTTCCCCTCTTCTTTTCTCCACTCCTTCTTCCTTTCTTCCACTTCTT
TTCCTCTTCTCTCCTCTTTTCCCATCCTTTATTCTCCCTCCCACTTATCC
CTTACTATTCTACCCTCTTCCCCCCTTCTTTTTCCCCTATTCCCTTCCCT
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_h10.b1 MSMg01no090_h10.b1 CHROMAT_FILE:
MSMg01no090_h10.b1 PHD_FILE: MSMg01no090_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:38 2005
         (317 letters)



>mm_chr1_22946907_22947623
          Length = 717

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaagcatctacgagcctctttggtttgggtttaggatttctttctttcttttt 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaagcatcaatgagcctctttggtttgggtttaggatttctttctttcttttt 264

                                                                       
Query: 65  tctttttcttttttaccatagtgtatcaagcggaaaaaaataccagagactcacatccag 124
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttttcttttttaatatagtgtatcaagcggaaaaaaataccagagactcacatccag 324

                                                                       
Query: 125 ataagataagcttatgcggaaattaaagaatttcacacgaggcatctcctcggagaatta 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 ataagataagcttatgcggaaattaaagaatttcacacgaggcatctcctcggagagtta 384

                                                                       
Query: 185 gttgcttgcttagacatacacagggcatgcctctctactgggcaggtctactgagagtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgcttgcttagacatacacagggcatgcctctctactgggcaggtctactgagagtaa 444

                                                                       
Query: 245 cacagggtcgttttgatttgaatttttcctggcggtcctgtgaaggcttgatgccccagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacagggtcgttttgatttgaatttttcctggcggtcctgtgaaggcttgatgccccagt 504

                        
Query: 305 ataggggaaggtg 317
           |||||||||||||
Sbjct: 505 ataggggaaggtg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)