BAC Information

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BAC

Clone NameMSMg01-090H15
Chromosome1 (Build37)
Map Location 49,754,574 - 49,754,857
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090H15.T7 (MSMg01no090_h15.b1)MSMg01-090H15.TJ (MSMg01no090_h15.g1)
ACCAG308696AG308697
length739766
length of high quality
(start - end)
171 (45 - 215)283 (74 - 356)
definitionCHROMAT_FILE: MSMg01no090_h15.b1 PHD_FILE: MSMg01no090_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:39 2005CHROMAT_FILE: MSMg01no090_h15.g1 PHD_FILE: MSMg01no090_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTGATATGCACTCACTGATAAGTGTATATTAGCCCAGAAACTTA
AAATACCCAAGATACAATTTGCACAACACAAGAAACTCAAGAAGAAGGAA
GACTAACTCATGGATACTTCATTCCTCCTTAGAAAATGGAACAAATACCC
ATGTGAAGGAGTTACAGAGACTAAGTTTGGAGCTGAGATGAAAGGATGGA
CCATCCAGAGACTGCTCCAGCAGGGGATCAAACCCTTAATCAGCCACCAA
AGGAGACACTGTTGCATATGCCATATTGATTTTGCTGATAGGACCCTGAT
ATAGCTGTCTCTTGTGTTTGTCCCCCCTCGCCCCGCCAAATACAGAAGAT
GATGCTCATTGTCATCTACTGACTAAAAAAAAGAAACCCCAATGGAGGAG
CCAGATAAAGGACCAAAGATACTGAAGACCCGAGCAAAACCTATAAAAGA
AAATCCACTAAGAACTAAATTTTTCCCTCAGAGCTCGTGTACCATAGTGC
TAATTGTTTAAAACTATGGCCATTTAGATCATTATTGCGATAACAGTCCC
CATGTTCTACGATTACTTTAATCCCTTCTGTTCCGTGTTAATGTAAATAC
TCCTAATACTAAATAGTTTATTAAATATCTCCCTTATTATACAACCATTC
AATTTCATCTTCCTTTTTATCTCCCTTTCTTTCATTTTA
AATGACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGATTAGTAAAGCAAATGAGGGTGAT
AACAAGACTACATTGAATTTAAGTTTTTCAATGAAATGTTGAGTTATAAA
AGTAAAAATCTCAAGATTCTTAACTAAAATTATAATCAAACATGTAAAAC
TAAATTGTGGGGGGATTTAAAAGTGAATATGATAAAATGGAATGAACCAA
TAACAATTTCAGAAAAACGTATCAGGAGTGACTATAATATAAATACCAAC
ACATGAAAGGTGAACATTTTTCTTGGAATAGAAGGCAGTTGTGAGTCTAC
CCAAGATTCTTATTTTGACTACCCACACACGAGAGAGAGGTGTGGTCCAG
GAAGGCAGGTAGTTACATAGACAGAAAGAAAGGATCATATAGAGAGTAAA
GTGTTACTTAATTATTTTTATCTTATAACCATATTATTATATATCATTAT
CTTACACACCACAAAACTTATTTCTACAATATATATTTATTACACCTTCT
TCTATAATAATATTTAATATTATTCAATAATACTATCCTATAAACAAATA
TATTTCTCTGTTTTATATTCTATCAACCCTCCTAAAAAATAAATTTTTAT
ATATATTTAATTTTTACATTTTTCTCTTCTTATCTCTCTATACTCTTTCA
TCTTACTATTTGTATATTCATCTATTTTAACTATATCCTTATTTAATTAA
TAATCATACGCATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_h15.g1 MSMg01no090_h15.g1 CHROMAT_FILE:
MSMg01no090_h15.g1 PHD_FILE: MSMg01no090_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:39 2005
         (283 letters)



>mm_chr1_49754374_49755057
          Length = 684

 Score =  501 bits (259), Expect = e-146
 Identities = 278/285 (97%), Gaps = 3/285 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattagtaaagcaaatgagggtgataacaagactacattgaatttaagtttttcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgattagtaaagcaaatgagggtgataacaagactacattgaatttaagtttttcaatg 260

                                                                       
Query: 61  aaatgttgagttataaaagtaaaaatctcaagattcttaactaaaattataatcaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aaatgttgagttataaaagtaaaaatctcaagattcttaactaaaattataatcaaa-at 319

                                                                       
Query: 121 gtaaaactaaattgtggggggatttaaaagtgaatatgataaaatggaatgaaccaataa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 gtaaaactaaattgtggggggatttaaaagtgaatgtgataaaatggaatgaaccaataa 379

                                                                       
Query: 181 caatttcagaaaaacgtatcaggagtgact--ataatataaataccaacacatgaaaggt 238
           |||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||||
Sbjct: 380 caatttcagaaaaatgtatcaggagtgactttataatataaataccaacaaatgaaaggt 439

                                                        
Query: 239 gaacatttttcttggaatagaaggcagttgtgagtctacccaaga 283
           ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 gaacatttttcttggaatagaaggcagttgtgagtgtacccaaga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)