BAC Information

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BAC

Clone NameMSMg01-091C07
Chromosome1 (Build37)
Map Location 53,843,881 - 53,844,225
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091C07.T7 (MSMg01no091_c07.b1)MSMg01-091C07.TJ (MSMg01no091_c07.g1)
ACCAG309180AG309181
length690706
length of high quality
(start - end)
480 (43 - 522)345 (72 - 416)
definitionCHROMAT_FILE: MSMg01no091_c07.b1 PHD_FILE: MSMg01no091_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:33 2005CHROMAT_FILE: MSMg01no091_c07.g1 PHD_FILE: MSMg01no091_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCAAATTCCTCCGGAAATGGATGGACCTGGAGGGCATTATCCTGAGT
GAGGTAACGCAATTACAAAAGAACTCAAATGATATGTACTCACTGATAAG
TGAATATTAACCCAGAAACTTAGTATAGTGAGATATAAGATACAATTTGC
AAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGC
TCATTCTTAGAATTTGAAACAATCACCCATGGAAGGAGTTACAGAGACAA
AGTTTGGAGCTGAGACAAAAAGATGGACCATCTAGAGACTGCCATATCCA
GGGATCCATCCCATAATTAGCCTCCAAGCGATGACACCATTGCATACACT
AGCAAGCCTTTGTTGCAAGGACGGTGATATAACTGTCCCTTGTGAGACTA
GGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGA
TGGATCACACGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCT
AAAGAGTTCTGCAACCCTATCAGAGGAACAACATTATGAACTAACCAGTA
CCCAAGAGCTCTTGACTCTAGCTGCCTATGTATCCAAAGATGACCTAGTC
GGCCTTCACTGGAAAGAGAAGCCCATTGGTGAGGCAAACG
CGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGTGAGCACGCTGGAAGCAACAATGAG
TTTGATTGCTGGAGATGGCCACCTGCTTACAAAATTAAATAAAATGCAAG
ACGACTGCTTAAAAGCTGGTGACAATGGGGATGGGGGTGGAGCTGATGAC
AAGAAGAGGGTGGTGGTGGTGGTGGCAGAGAAACTCATTGGTCAAGAGCA
CTTGCTGCTTTTGTAGAGGAGCAGAGCTCAGTTTCTAGTACCCACATCAG
GTAGCTGATGACATTTAACTCCAGCTCCGGGTGGGTGTTGTGGGCAACAC
CTTTAACCTCCTCTGGCACACTCACCCATACACAAACACTCCTCACATAA
TGAAACGTCGTTTTTGCTCGTTTGCCTGTTTGTTTGTCTGTCTTGCTTTC
ATTACGCTGTCTTTGCCCCTGTTCAGCTGTCTCCCCTTTTCCTCTTGATC
ATCTTCCCTCCTCCCCGATCCCATTTCTCAATTTTTTGCTCCACGCTGCA
CACATGGTACCTTGACCTCTGTCCTTTGGTACTCCTCGTGCATCCTATTT
ATTTTGCCTTCCTGTTTACCTCCCCGGTCTCCTTTGTTTTTACTGTATTT
GCCAATTTCCCCCGCCCTCCCTTTTCCACCTTTGTTCCCTTTCTCCCCCG
TCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_c07.g1 MSMg01no091_c07.g1 CHROMAT_FILE:
MSMg01no091_c07.g1 PHD_FILE: MSMg01no091_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:33 2005
         (345 letters)



>mm_chr1_53843871_53844615
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtgagcacgctggaagcaacaatgagtttgattgctggagatggccacctgcttaca 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 355 caggtgagcacgctggaagcaacaatgagtttgattgctggagaaggcaacctgcttaca 296

                                                                       
Query: 61  aaattaaataaaatgcaagacgactgcttaaaagctggtgacaatggggatgggggtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaattaaataaaatgcaagacgactgcttaaaagctggtgacaatggggatgggggtgga 236

                                                                       
Query: 121 gctgatgacaagaagagggtggtggtggtggtggcagagaaactcattggtcaagagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gctgatgacaagaagagggtggtggtggtggtggcagagaaactcattggtcaagagcac 176

                                                                       
Query: 181 ttgctgcttttgtagaggagcagagctcagtttctagtacccacatcaggtagctgatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttgctgcttttgtagaggagcagagctcagtttctagtacccacatcaggtagctgatga 116

                                                                       
Query: 241 catttaactccagctccgggtgggtgttgtgggcaacacctttaacctcctctggcacac 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 115 catttaactccagctccgggtgggtgttgggggcaacacctttaacctcctctggcacac 56

                                                        
Query: 301 tcacccatacacaaacactcctcacataatgaaacgtcgtttttg 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tcacccatacacaaacactcctcacataatgaaacgtcgtttttg 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)