BAC Information

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BAC

Clone NameMSMg01-091J22
Chromosome1 (Build37)
Map Location 62,172,285 - 62,235,239
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091J22.T7 (MSMg01no091_j22.b1)MSMg01-091J22.TJ (MSMg01no091_j22.g1)
ACCAG309520AG309521
length758760
length of high quality
(start - end)
114 (99 - 212)191 (130 - 320)
definitionCHROMAT_FILE: MSMg01no091_j22.b1 PHD_FILE: MSMg01no091_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:12 2005CHROMAT_FILE: MSMg01no091_j22.g1 PHD_FILE: MSMg01no091_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,235,126 - 62,235,239)(62,172,285 - 62,172,471)
sequence
TACAAGGATCCGCGGAATTCAAAGCTATATATTGACCACTGTGTCTCAAA
ACAAACAAGCAAGCAAACAAATAGACACCCCAGTAGATTAGATAAACTTT
ATATTAAAAATGCCATAAACATTTAAGAAGCAATAATTCACTGGTTGACG
TACATACTTAAATTTTTTTAATGTATTTTTTTGTGTGGAAGAGATATACT
TGTGTGTGGTAGGGGGAGTGGCGTATATGCAATTCGTTATTCTTTACTCC
CTCTTCCCTTCTTCTCCCTTAACCCTTCTAAACAACACCCCTTCTTATAC
TTCTTTCTATCCCTTTTCCTTCTTTCTCCTTTTCCCTCTCTTTTTTTTTC
CTTTCTCTCCATGTATTTTATAACCTCTCTCCCTCCTTGCCTCCCCCTCT
CCATTCTCCATACTATTATTTCTTTTTCTCCTCTTTTTTTCCCCTACACA
AATATACCTATATTATCTTTTCTCCTTGCTCTCTCCTCTTCACCCTCTCT
TCACTTTCTCCCTCTTTTCTTCTTTTTTCGCTTTTTCCTTCCCTACTACT
TTTTTCTATATACCCCTCCTTTTCCCTTCCTTTTCTCTCTGTTCTCATTT
CCCCTGTCTCCCCCTTCCTCCTCTCCTTCCTCCATTACCCCCAACTTTTC
TTCTTCCTTCTATACTTTTCTCATACCCTCTTTCCTTCCCCTCCCCTCCT
CTTCTCTCTTCTCCCTACCCTCCCTTCTCTCTTTTTTCTTCCCTCTCCTC
TTCCCTCA
AATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCGCCATTCTGTAATTCCCAAGTGAGATGGATGAAATG
AAGAAAGTACTCTCTGTGTGATATGACCTCATTATAGAAGTCAATGTCAT
GATTTCAACAATGGCTGTATCTTCTATTTCATTAGTTTTTTATTTTATAT
TTGTCTTCCTCCTCATTTTTATATTTATGCTTTAATTCCCAGGGTTTGTT
TGACACTTTGCACAGTTATTGAAGTTTTTAAACATATGCAAAAGTAGATT
ATCAAAAGATACAGCATGCAGTGGGGATCAATCTTCTGCCCCTAGTGCAA
GTCACTCAACCTGCTCTCTTTTTCTTTAATTCGCCTCCATATTGCAAACT
CCTTCCTTGCTTCATGACCTTTACATGTAAATCCCTCAAAGTGCGCCTCT
GAAGAATAGTACCTCAAGCATACTCATCATGCAGACATCCTCAGTCGCAA
TTAATCAAGCATTATATACCACCTAATACCTTCCCTGTTACCCCTTATTC
ACATATCAAAGTTTCGCTTTCAGTCTCATTTATTCTGTTGAGCTGCCTGG
CGTGAATGCGAATGTTCCTTTCTTAAATCCCCCTTTTGTTTACTTTTCCC
TCCTACTTTAACCCCTTGACATTGTGAAAAATCACCCCGCTATTTTCCTG
CCTTTTTCCAAAGCCAGCCTTTGTGAATAAATAATTTTAATTCCTCCTTT
TCTGCATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_j22.b1 MSMg01no091_j22.b1 CHROMAT_FILE:
MSMg01no091_j22.b1 PHD_FILE: MSMg01no091_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:12 2005
         (114 letters)



>mm_chr1_62234926_62235439
          Length = 514

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatattaaaaatgccataaacatttaagaagcaataattcactggttgacgtacatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttatattaaaaatgccataaacatttaagaagcaataattcactggttgacgtacatact 255

                                                                 
Query: 61  taaatttttttaatgtatttttttgtgtggaagagatatacttgtgtgtggtag 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taaatttttttaatgtatttttttgtgtggaagagatatacttgtgtgtggtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no091_j22.g1 MSMg01no091_j22.g1 CHROMAT_FILE:
MSMg01no091_j22.g1 PHD_FILE: MSMg01no091_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:12 2005
         (191 letters)



>mm_chr1_62172085_62172675
          Length = 591

 Score =  331 bits (171), Expect = 2e-95
 Identities = 183/187 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattatagaagtcaatgtcatgatttcaacaatggctgtatcttctatttcattagtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattatagaagtcaatgtcatgatttcaacaatggctgtatcttctatttcattagtttt 260

                                                                       
Query: 61  ttattttatatttgtcttcctcctcatttttatatttatgctttaattcccagggtttgt 120
           ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct: 261 ttattttatatttgtcttcctccccattttcatatttatgctttaatttccagggtttgt 320

                                                                       
Query: 121 ttgacactttgcacagttattgaagtttttaaacatatgcaaaagtagattatcaaaaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttgacactttgcacagttattgaagtttttaaacatatgcaaaagtagattagcaaaaga 380

                  
Query: 181 tacagca 187
           |||||||
Sbjct: 381 tacagca 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)