BAC Information

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BAC

Clone NameMSMg01-091K03
Chromosome1 (Build37)
Map Location 42,558,319 - 42,558,609
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091K03.T7 (MSMg01no091_k03.b1)MSMg01-091K03.TJ (MSMg01no091_k03.g1)
ACCAG309529AG309530
length707699
length of high quality
(start - end)
370 (36 - 405)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no091_k03.b1 PHD_FILE: MSMg01no091_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:13 2005CHROMAT_FILE: MSMg01no091_k03.g1 PHD_FILE: MSMg01no091_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CTTTTTTTTATCCCCTGAACCCCATTTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGCCCTTATATATATTGGATATTAGTCCCCTAT
CCGATTTGGGATAGGTACAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTAAAGAAGCTTTGCAGTTTCATGAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTGTCAATATCTTCGAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGCTCCTTGATCCA
CTTAGATTTGACCTTACTACTAGGAGATAGGAATGGATCAATTTGCAGTC
TTCTACATGATAAGCACCCGCTGTTCCAGCACCATTTGTTGAAAATGCTG
CCTTTTTTCCACTGGATGTGTTTAGCTCCCCTTGCCCAACATCACGTGAT
TTTATTTGCGCAGGTTTCATTTTCTGGAGTCTTCACATCCATTCCAATGC
CTCTACTAGTCTGCCCACCATTCCAATTCCATGGCCGTTTTTACAACAAT
TGTTCCCGTTGTACCTCCCTTACGTCCGGCCCGCTCGTTTCCCCCTTTAC
CTCTTCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGGTAACCACTTCCTGATCACCATGAA
AAAGCTACGTCTTATGTGTCCCCATTTGCTGTGAGTGCCTCAAGCTCAGG
GGAATGACGGGGGAGGGGGGGAGTGAGCAAGAGAGAGACAGAGAGACAGA
GAGAGACAGAGAGACAGAGTCTTGGCATCCAGTATCCAGTAGAAATAATG
GTGGTCTTTGAAAATGTAGTGGTTGTTCAATGGGAAGCCCTGGCTGCGTC
TTGATCTGAGCTCTGATTTCAGGTGAGGCTGGCTGAGGACAAGCCTTAAA
AGAGAGGATGACTCTCAAGAGAAGGCAGAGAGTGACATTTTTGAGTGTAA
CTCATAATTTCTTTTACTCATTGAGTCAACACTGCCTCATTCACAGCAGC
CTGCCTTCTCCACGCTGTCACCAGGATACCTCTCTCTGACTTTGCTTACC
TCTGATTCTAGAGATCTGAGAGTCACGTTGAAGGAATTATCCACCTGCTC
TGAGAAGAATTTGCGCTGTCCATAGATATGTGGCGCTTGACTCTTACTAA
CTTATCACCTCCTTAACTTGGTGGTCGGGCAACGCTTATTCTTTATGTCC
TTTCTCACAGGTTTGCCGTTTCCACGGGTGCCCACTCTGGCCTATTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_k03.g1 MSMg01no091_k03.g1 CHROMAT_FILE:
MSMg01no091_k03.g1 PHD_FILE: MSMg01no091_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:13 2005
         (291 letters)



>mm_chr1_42557971_42558661
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggtaaccacttcctgatcaccatgaaaaagctacgtcttatgtgtccccatttgctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 639 agaggtaaccacttcctgatcaccatgaaaaagctacgtcttatgtgttctcatttgctg 580

                                                                       
Query: 61  tgagtgcctcaagctcaggggaatgacgggggagggggggagtgagcaagagagagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgagtgcctcaagctcaggggaatgacgggggagggggggagtgagcaagagagagacag 520

                                                                       
Query: 121 agagacagagagagacagagagacagagtcttggcatccagtatccagtagaaataatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agagacagagagagacagagagacagagtcttggcatccagtatccagtagaaataatgg 460

                                                                       
Query: 181 tggtctttgaaaatgtagtggttgttcaatgggaagccctggctgcgtcttgatctgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tggtctttgaaaatgtagtggttgttcaatgggaagccctggctgcgtcttgatctgagc 400

                                                              
Query: 241 tctgatttcaggtgaggctggctgaggacaagccttaaaagagaggatgac 291
           |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 399 tctgatttcaggtgaggctggctgaggacaagccttaaaagagagggtgac 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)