Query= MSMg01no092_l05.b1 MSMg01no092_l05.b1 CHROMAT_FILE:
MSMg01no092_l05.b1 PHD_FILE: MSMg01no092_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:39 2005
(460 letters)
>mm_chr1_187625399_187626257
Length = 859
Score = 752 bits (389), Expect = 0.0
Identities = 447/473 (94%), Gaps = 15/473 (3%)
Strand = Plus / Minus
Query: 1 accacaaaacttcgctttaatcctgtcctgagattcatagtatttccagtttgtcttagt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 accacaaaacttcgctttagtcctgtcctgagattcatagtatttccagtttgtcttagt 673
Query: 61 agagtctctaccatggtctaacgaaatagctgagaatggatattttgtattttaaaacca 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agagtctctaccatggtctaatgaaatagctgagaatggatattttgtattttaaaacca 613
Query: 121 caagtttatttaactaatggttctggagcctggaaataccaagaacacgctatcagcatt 180
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 612 caagtttatttaactaagggttctggagcctggaaataccaagaacatgctatcagcatt 553
Query: 181 gtgtgaggtacttcaaactatcccataaaggggcagaaggcctcatatgctaagatagag 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 552 gtgtgaggtacttcaaactatcccataaa-gggcagaaggcctcatatgctaagatagag 494
Query: 241 gaagaactggt-atgtttgccctctcttcctataacgccaccagtcccatggtggtgcca 299
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 493 gaagaactggtca-gtttgccctctcttcctataacgccaccagtcccatggtggggccc 435
Query: 300 acaccctgataatcttctcaaacccccacctagagataccatcgatacatgaagat---- 355
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 434 acacccttataatcttctcaaccccccacctagagataccatcgatacatgaagattaag 375
Query: 356 ------ca--gacgtcagaaaggacattcaagccatggtgtttctttggtaacctgtaag 407
|| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 374 ttggagcaccgatgtcagaaaggacattcaagccatggtgtttctttgctaacctgtaag 315
Query: 408 cctgctcttgataggttcatctgatgttaggcctagaggggaggagtttcctg 460
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 314 cctgctcttgataggttcatctgatattaggcctagaggggaggagtttcctg 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space: 382050
Effective search space used: 382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_l05.g1 MSMg01no092_l05.g1 CHROMAT_FILE:
MSMg01no092_l05.g1 PHD_FILE: MSMg01no092_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:39 2005
(441 letters)
>mm_chr1_187570065_187570910
Length = 846
Score = 768 bits (397), Expect = 0.0
Identities = 433/447 (96%), Gaps = 7/447 (1%)
Strand = Plus / Plus
Query: 1 ctcagtgctcctcca-aattcttagaactaaagccaaagctctcacagcgcccttgttac 59
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctcagtgctcctccacaattcttagaactaaagccaaagctctcacagcggccttgttac 260
Query: 60 cctgtgtgactgtgtttccgtcccacccctggag-tcactacacgggagcattgtattta 118
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 261 cctgtgtgactgtgtttccgtcccacccctggaggt-actacatgggagcattgtattta 319
Query: 119 tggtcacatttccctctgctttcagggaatctggatttactgttctcatttttgttccat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggtcacatttccctctgctttcagggaatctggatttactgttctcatttttgttccat 379
Query: 179 gtgtatgtcagctatgttctgccttggggacctccagatcaaacatggatatctagtcaa 238
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatatgtcagctatgttctgccttggggacctccagatcaaacatggatatctagtcaa 439
Query: 239 ggcagggttcatgctgagacaacctttctagttgtaagcctgttaagtgctttaaatata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcagggttcatgctgagacaacctttctagttgtaagcctgttaagtgctttaaatata 499
Query: 299 cagtgatggagtggggatagggcagagagtcctatttgagaatccagaaatcacttgaga 358
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 500 cagtgatggagtggggatagggcagagagtcctatttgagaagcgagaaatcacttgaga 559
Query: 359 ggaaaagaataagggtcccaagaaaatataaaactagaccatttatagtataaac----c 414
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 560 ggaaaagaataagggtcccaagaaaatataaaaccagaccatttatagtataaacaaacc 619
Query: 415 ttcataacatccttcctttcccaagtg 441
|||||||||||||||||||||||||||
Sbjct: 620 ttcataacatccttcctttcccaagtg 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 846
Length adjustment: 10
Effective length of query: 431
Effective length of database: 836
Effective search space: 360316
Effective search space used: 360316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
