BAC Information

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BAC

Clone NameMSMg01-093F09
Chromosome1 (Build37)
Map Location 68,262,776 - 68,263,198
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093F09.T7 (MSMg01no093_f09.b1)MSMg01-093F09.TJ (MSMg01no093_f09.g1)
ACCAG310808AG310809
length1,2761,255
length of high quality
(start - end)
423 (73 - 495)373 (72 - 444)
definitionCHROMAT_FILE: MSMg01no093_f09.b1 PHD_FILE: MSMg01no093_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:49 2005CHROMAT_FILE: MSMg01no093_f09.g1 PHD_FILE: MSMg01no093_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCTTATTATGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
TATGCAAGCTGTGCCCTTAAACCATATCAGTTTCTAATTGGATTGTCCTT
GGGCCCTTTCAGACATGCACAGTTGACATATTTTTTTCCTTTTGCAATTA
TGTGAAAATAATGGAGAAAGAAGAATATCTAGCACGCTATATCTCTTACT
TATAATTCACATTCAGTTCTTTCTAGTAAATTCAGAATTCATGAAAAGTA
GATATCAAAATTGACTTTTAAAGTGTTTGAATCTCACTGTTAAACTAAAC
CATAAAGGCAAAGGCAAAGAAAAATAATTTCTATTCTCATTCTTTTAGAA
TCTAAAAAAATAGAGAATATTGATAATTGACAAGTCATAACCTCTTTTGC
ATCTTTATACTCTCTTTGTTCACTAATGACATAGTTTATATTGACGTCAT
ATCCACAGAAAAGATTACTCTAGATTATTCTCCTATTGCTTAAAAAATGT
AGACTAATCTTATTCCTATTGTTACAAGTAACTCCTATTTTTATAATGGG
TACATAATTTTTACATCTTTATTTAAAATATACAATATTGGGTTAGCAAG
AACGCTCAATGCCTATTACGTATGCCCTAGAAGCATATTTCCTGAGTTCA
AACACCTGATTCCACTTAATGTTGGAATATCCATCCCAACTCTACATTAT
CTTCTGTTCACACAATGCATCATTATCTCCCTCTTACTCTATCATTGTGT
ACTAGATTATTATTTTTTTCCTTACATTATATAATTATTTTTCGGTAGGT
TTACCTTTATTCTATACCTCCAAATTTTGTGTTATCATCCTTTCTTCCCA
ATTTTATTGCTTATAACTACATTTTATGGCCTTTTTTAATAATTATTTCC
CCCCCTTTTTTTTTCTTTTTTCTTTTTTTTTTCTTCTTTTTTTATTTTTT
TTCTTTATCCCCCTGTTTTTTTGTGTTTAATATTTATATTTTAATATTTT
TATTGTTATTTCATTCTTTTCGGTTGTTTTTATCTTTCTTTTTAGCTTTA
CTCTTCTGCCTCGGATTTTTTTCTTTTTTATCTCTCTTTTTCTTAATCAT
CTATCTCTCTCCTTTCTTCATTATCTTTCTTATATTCCTACTGCTTATTC
TTTTCTTCNCTTCTCTTCTTCTTCGATTATCTCTCTCCTATTAATTCTTA
TTTTTACTTTCTCTANTCACTTATTTTTTGCCTTCTCTTATCTTTACGCT
TTCTTCTTCTTATTCTTCNATTTTCT
NNNTTGAACAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
ACACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGAAAATC
AAAACAACACTGAGATTCCACTCCACTTCACTCCAGTCAGAATGGCTAAG
ATCAAAAGCTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCAGCTCCTCAGAAAATTGCACATAGTACTACCGGAGGAT
CCCGCAACCTCCTGGGCATATATCCAAAAGATGTTCCAACCGGTAATATT
TTCACATGCTCCACTATGCTTATAGCAGCCTTATTTATAACACCCAGAAT
TTTTTTCCCCCCCCCCATGCCCCTCAACAGATGAATGAAAAAAAAAGGTG
TGGTCCATTTACACAATGGAACACTACTCAGTTATTAAAAAAATCGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGTCACATCGTGACTG
AAGTGACCCAATCACAAAGGAACTCGCACAATATGTACTTTACCTCTTAA
TTATCTGTATGCTTGTGTGTCCACTTTGAGGAACATGTATGTGACTGCAG
TTGCCAGTGAATGCCAGAACCTGGTGACATACCCCTGAAGCTGCATCTCC
CGTGTTTGTAAGCCACTTGATGCGATTGGAGCCCTTGTTTACTCTGTCAT
CATAATGCATGCTCCTTTATCCTTGTAAACTCTTCTTCGTTCTTCTCCGA
ACTTTTGCTTGGCTGATAATCCTTTATTGAATTTCCAAATATGTTTTACT
TTAATGCCTTATCTTTGAGTTTTTTCTTCCTCTTAAAAAAGGTACTTTTT
ATAACATATGTATTTTTCATGTTGCCTTACCTCTTTTGTTTGTCTTCTTC
ATCATATTTCCTTACCTCTATTGCCTCCTCATTTTTTTAATAATTGGTCC
TTTAATCTTTGCCTTAATACACCGTACATACTTTTATCCCCCTTTACTTT
TTATTCTCTACTTTCCCTTAAAAACTGTAATCCTCTGAGTATATCTTCTC
TCACATTATATTTCGCATCCATAATTGTGTAATCTTATAACACACTTATC
CCTCTCTCTCTAGCTATACTAGCACTTATATCTCTACTTTCTCTCTCTGT
TGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_f09.b1 MSMg01no093_f09.b1 CHROMAT_FILE:
MSMg01no093_f09.b1 PHD_FILE: MSMg01no093_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:49 2005
         (423 letters)



>mm_chr1_68262576_68263398
          Length = 823

 Score =  756 bits (391), Expect = 0.0
 Identities = 415/423 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatcagtttctaattggattgtccttgggccctttcagacatgcacagttgacatatt 60
           ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 623 catatcagtttctaattggattgtccttggggcagttcagacatgcacagttgacatatt 564

                                                                       
Query: 61  tttttccttttgcaattatgtgaaaataatggagaaagaagaatatctagcacgctatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttttccttttgcaattatgtgaaaataatggagaaagaagaatatctagcacgctatat 504

                                                                       
Query: 121 ctcttacttataattcacattcagttctttctagtaaattcagaattcatgaaaagtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctcttacttataattcacattcagttctttctagtaaattcagaattcatgaaaagtaga 444

                                                                       
Query: 181 tatcaaaattgacttttaaagtgtttgaatctcactgttaaactaaaccataaaggcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatcaaaattgacttttaaagtgtttgaatctcactgttaaactaaaccataaaggcaaa 384

                                                                       
Query: 241 ggcaaagaaaaataatttctattctcattcttttagaatctaaaaaaatagagaatattg 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggcaaagaaaaataatttctattttcattcttttagaatctaaaaaaatagagaatattg 324

                                                                       
Query: 301 ataattgacaagtcataacctcttttgcatctttatactctctttgttcactaatgacat 360
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 323 ataattgacaagtcataacctctacggcatctttatactctctttgttcactaatgacat 264

                                                                       
Query: 361 agtttatattgacgtcatatccacagaaaagattactctagattattctcctattgctta 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtttatattgatgtcatatccacagaaaagattactctagattattctcctattgctta 204

              
Query: 421 aaa 423
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)