BAC Information

Click to search

BAC

Clone NameMSMg01-094B01
Chromosome1 (Build37)
Map Location 167,682,300 - 167,826,664
singlet/doubletdoublet
Overlap geneCreg1, Cd247, Pou2f1
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1
Downstream geneLOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094B01.T7 (MSMg01no094_b01.b1)MSMg01-094B01.TJ (MSMg01no094_b01.g1)
ACCAG311339AG311340
length670689
length of high quality
(start - end)
577 (36 - 612)619 (71 - 689)
definitionCHROMAT_FILE: MSMg01no094_b01.b1 PHD_FILE: MSMg01no094_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:33 2005CHROMAT_FILE: MSMg01no094_b01.g1 PHD_FILE: MSMg01no094_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,682,300 - 167,682,873)(167,826,046 - 167,826,664)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTC
CAGTGTGAGCACAGCGGGCACATAGACAACACCATAGACAACACCATCTG
TCCAACACAGACTGATAAGTAACTTCGTAAAAGTAAAGAGGATTGGACTG
GAGAGATGCCTTTGCCATTAAAGGCTAGGCTTACAACCAAAGCCTGTACA
TTTTACCAAAATAGGTCGGCATCATATGAACACAAGGGATATTAGAATCG
TCTAAGGAGCTGGAGAGAAAGAGCTCACCAACTGAAAGCACTGATTTCTC
TTCCAGAGGACCTGAGTTCAGTTCCCCAAAACCATACAGCTCCTCACAGC
CTTCTGTAACTCCAGTTACAGGGACTCTGACACCCTCTCTGGACTCTGTG
AGCAGCGTGTATACCCAGTACACATAACATTCAAGCAAAATGCTCCAACA
CATAACATAAAACACATACATCTAAAACTTTTTATCATACCTTATATGAA
ACTTAAGGAAACTTATCAAACACACAAGAACGAGGAAAGGGTATGCCTTT
ACCTGAACTGCCTAAAGAGGACATTAACCACTGTAACCATGATAATCCAC
CCTGCCCACTCCCGCACCCCACCTCCACTGACAAACTGACATGTGGCCTC
TTGCTATGTCAAGGGATCAG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCAGGATTGGGGGCTGAGGGCTTGAATCG
TAGGAGGAAAAAACGCACCAGCATAGAGACCAACATCCGTGTGGCCTTAG
AGAAGAGTTTCATGGAGGTGGGTGTGACTTTTCATGTGTACGGCACTGTT
GGGGACTGCAGAGATTAAAGCATAGCCTTGTCTTCCTCCGCCCTGTGGGC
ATTTAACAGGGAGAAAGGAGGATACCAGGTGCTACTGCACTTTAGCGCTG
CAGAACTCGAGAGAGACAATGGTTTGAATCATGTGAGCTTTTGGGAGGGA
GCTAATCTTGCAGACTGGAAAAGATAGAAGAGTACCTCACACAGAGCCAT
CTCATAAGCATAGGCCTCCAGAGGAAACCATGCCTGTTCAGACAAAACAC
TGGTGGTTTGGCTGGCTAAATTTTAGTGTCTTTATGCCTAGAATGGTAGT
TTGGGGGCACAACACTAGAGACCTCGAATATCCTATTCTGGAGTTCAAAT
TAATTCAACAGATATTTGGCTTTAAAACAAATGAACTTTCTACTTAAGGA
AACATTGAATCAGGAGTCTTTCTTGTCTTTGCCTCTTATTAAAGGCACAT
CACGTCTCTTGATTTCAAGATGTTCCTGCGCCTATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_b01.b1 MSMg01no094_b01.b1 CHROMAT_FILE:
MSMg01no094_b01.b1 PHD_FILE: MSMg01no094_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:33 2005
         (577 letters)



>mm_chr1_167682097_167683073
          Length = 977

 Score = 1110 bits (574), Expect = 0.0
 Identities = 574/574 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttccagtgtgagcacagcgggcacatagacaacaccatagacaacaccatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttccagtgtgagcacagcgggcacatagacaacaccatagacaacaccatc 263

                                                                       
Query: 64  tgtccaacacagactgataagtaacttcgtaaaagtaaagaggattggactggagagatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtccaacacagactgataagtaacttcgtaaaagtaaagaggattggactggagagatg 323

                                                                       
Query: 124 cctttgccattaaaggctaggcttacaaccaaagcctgtacattttaccaaaataggtcg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctttgccattaaaggctaggcttacaaccaaagcctgtacattttaccaaaataggtcg 383

                                                                       
Query: 184 gcatcatatgaacacaagggatattagaatcgtctaaggagctggagagaaagagctcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcatcatatgaacacaagggatattagaatcgtctaaggagctggagagaaagagctcac 443

                                                                       
Query: 244 caactgaaagcactgatttctcttccagaggacctgagttcagttccccaaaaccataca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caactgaaagcactgatttctcttccagaggacctgagttcagttccccaaaaccataca 503

                                                                       
Query: 304 gctcctcacagccttctgtaactccagttacagggactctgacaccctctctggactctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctcctcacagccttctgtaactccagttacagggactctgacaccctctctggactctg 563

                                                                       
Query: 364 tgagcagcgtgtatacccagtacacataacattcaagcaaaatgctccaacacataacat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgagcagcgtgtatacccagtacacataacattcaagcaaaatgctccaacacataacat 623

                                                                       
Query: 424 aaaacacatacatctaaaactttttatcataccttatatgaaacttaaggaaacttatca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaacacatacatctaaaactttttatcataccttatatgaaacttaaggaaacttatca 683

                                                                       
Query: 484 aacacacaagaacgaggaaagggtatgcctttacctgaactgcctaaagaggacattaac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aacacacaagaacgaggaaagggtatgcctttacctgaactgcctaaagaggacattaac 743

                                             
Query: 544 cactgtaaccatgataatccaccctgcccactcc 577
           ||||||||||||||||||||||||||||||||||
Sbjct: 744 cactgtaaccatgataatccaccctgcccactcc 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no094_b01.g1 MSMg01no094_b01.g1 CHROMAT_FILE:
MSMg01no094_b01.g1 PHD_FILE: MSMg01no094_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:33 2005
         (619 letters)



>mm_chr1_167825846_167826864
          Length = 1019

 Score = 1174 bits (607), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggattgggggctgagggcttgaatcgtaggaggaaaaaacgcaccagcatagagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tccaggattgggggctgagggcttgaatcgtaggaggaaaaaacgcaccagcatagagac 760

                                                                       
Query: 61  caacatccgtgtggccttagagaagagtttcatggaggtgggtgtgacttttcatgtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 caacatccgtgtggccttagagaagagtttcatggaggtgggtgtgacttttcatgtgta 700

                                                                       
Query: 121 cggcactgttggggactgcagagattaaagcatagccttgtcttcctccgccctgtgggc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 699 cggcactgttggggactgcagagattaaagcatatccttgtcttcctccgccctgtgggc 640

                                                                       
Query: 181 atttaacagggagaaaggaggataccaggtgctactgcactttagcgctgcagaactcga 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 639 atttaacagggagaaaggaggataccaggtgctactgcacttcagcgctgcagaactcga 580

                                                                       
Query: 241 gagagacaatggtttgaatcatgtgagcttttgggagggagctaatcttgcagactggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gagagacaatggtttgaatcatgtgagcttttgggagggagctaatcttgcagactggaa 520

                                                                       
Query: 301 aagatagaagagtacctcacacagagccatctcataagcataggcctccagaggaaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aagatagaagagtacctcacacagagccatctcataagcataggcctccagaggaaacca 460

                                                                       
Query: 361 tgcctgttcagacaaaacactggtggtttggctggctaaattttagtgtctttatgccta 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgcctgttcagacgaaacactggtggtttggctggctaaattttagtgtctttatgccta 400

                                                                       
Query: 421 gaatggtagtttgggggcacaacactagagacctcgaatatcctattctggagttcaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaatggtagtttgggggcacaacactagagacctcgaatatcctattctggagttcaaat 340

                                                                       
Query: 481 taattcaacagatatttggctttaaaacaaatgaactttctacttaaggaaacattgaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taattcaacagatatttggctttaaaacaaatgaactttctacttaaggaaacattgaat 280

                                                                       
Query: 541 caggagtctttcttgtctttgcctcttattaaaggcacatcacgtctcttgatttcaaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caggagtctttcttgtctttgcctcttattaaaggcacatcacgtctcttgatttcaaga 220

                              
Query: 601 tgttcctgcgcctataaaa 619
           |||||||||||||||||||
Sbjct: 219 tgttcctgcgcctataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)