BAC Information

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BAC

Clone NameMSMg01-094E11
Chromosome1 (Build37)
Map Location 128,583,118 - 128,583,380
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094E11.T7 (MSMg01no094_e11.b1)MSMg01-094E11.TJ (MSMg01no094_e11.g1)
ACCAG311493AG311494
length730718
length of high quality
(start - end)
275 (28 - 302)535 (75 - 609)
definitionCHROMAT_FILE: MSMg01no094_e11.b1 PHD_FILE: MSMg01no094_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:52 2005CHROMAT_FILE: MSMg01no094_e11.g1 PHD_FILE: MSMg01no094_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGGCCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCCTGCAG
GTATCAAGAGGTGGCCTGGGATGAAGCTACTGCTCTTGTTCTTTTCCTTT
GTGTGATATCCCACTGGCCCTGTGAGCATGGGAGGCAGCGATGCAGACAG
GGAAGTCCTTGGGATAGTTAGGGGCTATGTGAGGATCTTCCAGGCCAGAT
AGATTAGGCTCTTGAGCCTACTTGGTGAAGTCAACAAGGAGGAGGGGAAG
CAGAAATAGAGGGAGAGAAGGAAGAAGGGAGAGAGGAGATGGAGGGAGAG
ATCTCCTTTTTTTTTTTTCTTTGTTGCTTTTTTGTTTTGTATTTATTTTT
TTTTTTCCCCCCCCCCCCCCCCACCCTTTTTTTCTTTCCATTTGCTTTTT
CGCCTCTCCACCCCATAAAAAAAAAAATGCCGCGGGGCGGGGGGGTGCCG
TACCAAACGCCCTCCTTACTCGTTTACCGTCCCTGATTCTTCTTTTTTTC
TCTTTGTAGTGTCCTTCCGCCGTTCTTATTTGCTATCGCCTTAATTACCC
ACTTAACCCCGTATCTTATATCATGACTCTTGCTCTTTTCTATCGTATAC
CCTACTACATCCCTCTCTCACTATTACTTCCCGTCCTCTTGCCTCTCATT
CCATGTTCCCCCACCGCGTTTTCTCTAACGACGTTCTTTCCATACATTTC
GTTATGTGTCCTCCTGCCTCCGTTTTCTAT
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCAACACTCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGA
TCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGAAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAAT
TTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACCATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GCGTATATTAGCCCAAAACCTATCATACCCAAGATATAAGATACTATTTC
CTAAACACATGAAACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_e11.b1 MSMg01no094_e11.b1 CHROMAT_FILE:
MSMg01no094_e11.b1 PHD_FILE: MSMg01no094_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:52 2005
         (275 letters)



>mm_chr1_128582973_128583647
          Length = 675

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcctgcaggtatcaagaggtggcctgggatgaagctactgctcttgttcttttcct 71
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaattcctgcaggcatcaagaggtggcctgggatgaagctactgctcttgttcttttcct 349

                                                                       
Query: 72  ttgtgtgatatcccactggccctgtgagcatgggaggcagcgatgcagacagggaagtcc 131
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttgtgtggtatcccactggccctgtgagcatgggaggcagcgatgcagacagggaagtcc 289

                                                                       
Query: 132 ttgggatagttaggggctatgtgaggatcttccaggccagatagattaggctcttgagcc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgggatagttaggggctatgtgaggatcttccaggccagatagattaggctcttgagcc 229

                                                                       
Query: 192 tacttggtgaagtcaacaaggaggaggggaagcagaaatagagggagagaaggaagaagg 251
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tacctggtgaagtcaacaaggaggaggggaagcagaaatagagggagagaaggaagaagg 169

                                  
Query: 252 gagagaggagatggagggagaga 274
           |||||||||||||||||||||||
Sbjct: 168 gagagaggagatggagggagaga 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)