BAC Information

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BAC

Clone NameMSMg01-094L19
Chromosome1 (Build37)
Map Location 42,558,131 - 42,558,609
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094L19.T7 (MSMg01no094_l19.b1)MSMg01-094L19.TJ (MSMg01no094_l19.g1)
ACCAG311823AG311824
length1,143677
length of high quality
(start - end)
---479 (53 - 531)
definitionCHROMAT_FILE: MSMg01no094_l19.b1 PHD_FILE: MSMg01no094_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:31 2005CHROMAT_FILE: MSMg01no094_l19.g1 PHD_FILE: MSMg01no094_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAAAAAAAAAAAAAAAAAAANNAATAAAAACTTNNNCNNNNNNNA
NNANNNTTATATAAAAAAATTAATTANATANTAATTTTATTAAACATTTA
TATTGGCCCTNCTCCCCCACTTATAAACCTACCCCGCCACCACTTTTTAT
TTATTTATTATTACGCCACACTCAACTCGCGCCCTTCTCGCTCTATTTAG
TTCCGTCTCTAATATCCGCAAATATCCGTTATACTAACAGCACACTGGAT
TCTTTCTTCTTTCCCTTCCTCGTCTACACGCCCCCCTCCTCCCGCCGCCG
GACCGCCGCGCTGTATTCATGCCCATTTGAAGCCATGTGCCGACCTCCGA
CTCCAGTATCCGGAGTCCGCCAGCACTATACGTCGCGCCAGCATTGGGCC
GTTTGATCTATATAAGCGCTCTACCCGGATTACCTCCGCTTATCGTATAT
TCCGCCGTATATCCCTATGCCAGGGTGTTACCGGCTTCTATCGTTGATCC
TCTGTTCGTATTTCACATCTTTCTTATCTTCCTCTATTACCATCAACATC
CCCTATTATCCGACCGTTTCTCCCTCTTCTCCTTTATTCCCATTAATGAG
GCGTCGCGTTTAGGTGTCCCTCGCCGGCACTAGCGCCATTCCTGCTTGCA
CCGTTTATGCGAGGTTATGCGGTGCTGTGGGCGTTGTGTTGATTCTGTGT
GTATTTGTCCTGAGGGATTGTTTTCTATGTACACGCGTTCTAGATTAGAT
GGGTGTCGTGGCGGGTGCATGNTGTCTGCGGAGAGTTGGAGTGGTTGACC
TTGACGGCACGCTGCTAATCGTCGTCATATTGTGTGAGGGTGGCGCGTCG
GTTTGTCACTACTGGTCTCGCTATGCCTGAGTCAGGCGCGGCCCTAGCCG
CTCCCGCAGTTGTTAGGCCGCCCACAGCGTGCGCTCAGTGCGCAACCCAC
TCTAAAAGACGCCGGCATACCTTTCTGAGTTCACCAACATACTCACAATA
TGCCTCCCTGCCGCGCTGTAATGATATATCCCGCGTTTTTTTTGTTGTTA
TTCATGGTTATAATTACGGGCGCTTGCCGGTTCTGGGTGTGTACGTGCGT
CTGGTATGCGCTTGTATACCGCGCGCTGAGTTTTGTCCGCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXAGAGGTAACCACTTCCTGATCACCATGAAAAAGCTACGTCTTATGTGT
TCTCATTTGCTGTGAGTGCCTCAAGCTCAGGGGAATGACGGGGGAGGGGG
GGAGTGAGCAAGAGAGAGACAGAGAGACAGAGAGAGACAGAGAGACAGAG
TCTTGGCATCCAGTATCCAGTAGAAATAATGGTGGTCTTTGAAAATGTAG
TGGTTGTTCAATGGGAAGCCCTGGCTGCGTCTTGATCTGAGCTCTGATTT
CAGGTGAGGCTGGCTGAGGACAAGCCTTAAAAGAGAGGATGACTCTCAAG
AGAAGGCAGAGAGTGACATTTTTGAGTGTAACTCATAATTTCTTTTACTC
ATTGAGTCAACACTGCCTCATTCACAGCAGCCTGCCTTCTCCACGCTGTC
ACCAGGATACCTCTCTCTGACTTTGCTTACCTCTGATTCTAGAGATCTGA
GAGTCAAGTTGAAGGAATTATCAAACTGATCAGAGAAAAAATTGGGCTGT
CCATAGATATGTGGGTTTGACTCTTAGTAACTTACAATCTCTTTACCCTG
GCGGTGTGGAAAGCACAATCCTATGTCCTTCCTAATGGTTTGAGATAAGA
GTGTGCCAACACCTGTCAAATTGTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_l19.g1 MSMg01no094_l19.g1 CHROMAT_FILE:
MSMg01no094_l19.g1 PHD_FILE: MSMg01no094_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:31 2005
         (479 letters)



>mm_chr1_42557783_42558661
          Length = 879

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggtaaccacttcctgatcaccatgaaaaagctacgtcttatgtgttctcatttgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 agaggtaaccacttcctgatcaccatgaaaaagctacgtcttatgtgttctcatttgctg 768

                                                                       
Query: 61  tgagtgcctcaagctcaggggaatgacgggggagggggggagtgagcaagagagagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgagtgcctcaagctcaggggaatgacgggggagggggggagtgagcaagagagagacag 708

                                                                       
Query: 121 agagacagagagagacagagagacagagtcttggcatccagtatccagtagaaataatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agagacagagagagacagagagacagagtcttggcatccagtatccagtagaaataatgg 648

                                                                       
Query: 181 tggtctttgaaaatgtagtggttgttcaatgggaagccctggctgcgtcttgatctgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tggtctttgaaaatgtagtggttgttcaatgggaagccctggctgcgtcttgatctgagc 588

                                                                       
Query: 241 tctgatttcaggtgaggctggctgaggacaagccttaaaagagaggatgactctcaagag 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 587 tctgatttcaggtgaggctggctgaggacaagccttaaaagagagggtgacactcaagag 528

                                                                       
Query: 301 aaggcagagagtgacatttttgagtgtaactcataatttcttttactcattgagtcaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaggcagagagtgacatttttgagtgtaactcataatttcttttactcattgagtcaaca 468

                                                                       
Query: 361 ctgcctcattcacagcagcctgccttctccacgctgtcaccaggatacctctctctgact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctgcctcattcacagcagcctgccttctccacgctgtcaccaggatacctctctctgact 408

                                                                      
Query: 421 ttgcttacctctgattctagagatctgagagtcaagttgaaggaattatcaaactgatc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttgcttacctctgattctagagatctgagagtcaagttgaaggaattatcaaactgatc 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)