NNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNCCCCNNNNNCCCCCGC
NNNGGATTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CCGCGGAATCACTGGTTCACCAGTCTAGCTAACTAGTGAGCTCCGATGTC
AGTAGAACCCCATCGGTCTCTAACACCCTGAGCACTAAAGAAAGATCTGT
GGTGTTGAGCTCTACCCTCCACTCTCCCTGGAAGGCAGGAAGCACAGCAT
GCGTATGTGAGCCGCATACTTCTGCTCTGAATCAGTTTCTTGCTGTCTAT
GGCAGCTCTGAGTGTCTTAACTCTCCATCCTCAGACCAGCGTAAACTGAC
TTTTGTGAAACTGGTACAAGTTATAACAATGCCTAGTGTTGTACAGAGTT
GATACAGATTTCTTTTTTTCTACTGCAACCCGCTGCTAATATGTGGCTTT
AGTTATAGTGAAGATTGTCCTCCAAAAAAAATATGTCTGATTGGAGAATA
CTATCATAAACTATAGAGATGAAATTGTTCATTTTGACTTGTTTTTCTAA
TTCATCGGCCAACTGATAAAACCTTCATCACGTATTTTTTTATTTGCGAC
CATAAGTCTATCTGGAAAGTCAGTGTTCTCCCTGGAACAGATAAATAAAC
AAATAAACACATACTATTTTTACATTTCCCTTTTCAAACTAACTTTCAAG
TTACATTATCAACTTATACCATACCACTAAAAAATTAACACATTATTTTT
TAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTTACATCGTTAAAGATGCTTACTTTTAGTTAACATAAAAGAGTT
AGCACGACTTTGTTTTGTTTTGTGAGGCAGCATCTTGCCGGTGACATCAG
CGATGGGAGCAGAGTCTCTGGTCATCTAAGAGAGGAAGAAAAGACAAAAA
GCATTTGCTCTATGCATCCTTGCGGCTTCTATCACATCTCCCCTTTTTTG
CCATTTTTGCCCGATAAGGCAGTTGTTTATCTGCAGCTACATTTGGGGCT
TGGTTATATGATAGAATTCAAGTAATCATTTGACTGTATTTGTAGGGGGC
TTTTCCCCTCCCAAGGAGAATTGTTCATTTAACTTATGTCATTTTTATTT
CTCCTGGCCTTACCAAAAAGTATGCAATGAACAAAGGTCATGTAAAAGAT
ACCTCTGAAACTGAAGGGTGGTTTTGAGCTTTGATGATTCAGTGGGAAAA
AATACTGTCTTCTTGGGAGAGAGACAAATAATTAAACCTGGAAAACTGAG
ATGAAGTAGGCAAAGCTGGGGTCAGGCCAAGGCATTATGAATGCAATCCC
AGGCAGTAAACCGTAGGGGTGGCAAGGGAACAGATCTGACCCATTGCAAT
CCTGCAAATCTGACCTTTTAGACCTGATGGCATTTGTAGAC

Query= MSMg01no094_o13.g1 MSMg01no094_o13.g1 CHROMAT_FILE:
MSMg01no094_o13.g1 PHD_FILE: MSMg01no094_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:45 2005
         (470 letters)



>mm_chr1_187324959_187325826
          Length = 868

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttacatcgttaaagatgcttacttttagttaacataaaagagttagcacgactttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 668 tcttacatcgttaaagatgcttacttttagttaacataaaagagttagcacgattttgtt 609

                                                                       
Query: 61  ttgttttgtgaggcagcatcttgccggtgacatcagcgatgggagcagagtctctggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgttttgtgaggcagcatcttgccggtgacatcagcgatgggagcagagtctctggtca 549

                                                                       
Query: 121 tctaagagaggaagaaaagacaaaaagcatttgctctatgcatccttgcggcttctatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tctaagagaggaagaaaagacaaaaagcatttgctctatgcatccttgcggcttctatca 489

                                                                       
Query: 181 catctccccttttttgccatttttgcccgataaggcagttgtttatctgcagctacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 488 catctccccttttttgccatttttgcccgataaggcagttgtttatctgcagctacattc 429

                                                                       
Query: 241 ggggcttggttatatgatagaattcaagtaatcatttgactgtatttgtagggggctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggggcttggttatatgatagaattcaagtaatcatttgactgtatttgtagggggctttt 369

                                                                       
Query: 301 cccctcccaaggagaattgttcatttaacttatgtcatttttatttctcctggccttacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cccctcccaaggagaattgttcatttaacttatgtcatttttatttctcctggccttacc 309

                                                                       
Query: 361 aaaaagtatgcaatgaacaaaggtcatgtaaaagatacctctgaaactgaagggtggttt 420
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 308 aaaaagtatgcaatgaacaaaggtcatataaa-gatacctctgaaactgaagggtggttt 250

                                                             
Query: 421 tgagctttgatgattcagtgggaaaaaatactgtcttcttgggagagaga 470
           ||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct: 249 tgagctttgatgattcagtgggaaaaa-tactgacttcttgggaaagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 868
Length adjustment: 10
Effective length of query: 460
Effective length of database: 858
Effective search space:   394680
Effective search space used:   394680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)