BAC Information

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BAC

Clone NameMSMg01-094O16
Chromosome1 (Build37)
Map Location 31,703,621 - 31,703,988
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094O16.T7 (MSMg01no094_o16.b1)MSMg01-094O16.TJ (MSMg01no094_o16.g1)
ACCAG311957AG311958
length692708
length of high quality
(start - end)
371 (43 - 413)364 (74 - 437)
definitionCHROMAT_FILE: MSMg01no094_o16.b1 PHD_FILE: MSMg01no094_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:45 2005CHROMAT_FILE: MSMg01no094_o16.g1 PHD_FILE: MSMg01no094_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACTTTCAGCCCACTTTCTCCATTTTATCCACTCTACGACCTCAGTG
GCTGAGATAGTACCACTCACTTTCAAGGGTGGGTTGTCCTCAGTCACAGT
TTTCTAGAAGCATGATCAGAGACTCATCCAAAGGGCCATTTCATCCAGAG
CATTCTAAAGCCCAATGAGGATCAACCATCAATAACTAAAGACCCAGGGT
AACAGTGCTGGGAGGTTGGTCTTATTGAAATGTTCTGGTCTGTTATCAGG
AATGGATTAATACTGATAAAAAAAAAAAGATGTTACCACACTATTCACTA
TGCTCTCTGCTTTGTTGTTTTTCTGCCTGGTGAAGACAGAGTATGGGTCT
TTGTCTTTCTGCGCCTTACTAGATGACAGTGAGTAAAAACACTTGATGCT
GACTCTTTGATCTTAGAGTTGATAGCCCAAGGTTGCGAGAAATAAATTTT
TATTGTTTACACATTACTGACTGCTGAAGCTTGTTATATAGCACAAGCTA
CCTTACTTAACAGATTAAATTCAACCTGATCGAAGTTGGAGCTTATGAAA
TTCATCTGAAACCATGACTTCCCCCTGATGTCACATTTTGACGACAAATA
CCAAAATCTAATTATTATTTTACTTATGTTCTGTAATATACA
CGATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCACACTTTTT
AATGAGATTATTTAATTTCTGGAGTTCAGCTTCTTGAGCTCTTTGGATAT
ATTGGATATTAGTCCCCTATAAGATTTAGGATTGGTAAAAATTCTTTCCT
AATTTGTTGGTGGCCTTTTGTCTTATTGACAGTGTCCTTTACCCTATAGA
AGTTTTGAAATTTTATGAGGTCCCATTTGTCGACTCTTGATCTTAAAGCA
AAAGCCATCACTGTTCTCTTTAGGAATTTTTCCCCTGTGCCCATATATTC
CAGGGTTTTCCCCACTTTCTCCTCTATAAATTTCAGGGTCTCTGGGGTTG
TTTGTTTGTTTGCTTTTTGAGACAGGGCTTCTCTGTGCAGCCTTGGCTGT
CCTGTACCCCACTCTTTATACTAGGCTGATCTTGAACTCAGAGATCCCTC
TGTCTCTGCCTTTTACCCGTTGTAATTAAACGTTAGCCCCCCCCCGCCCC
TGCCTTTTCTCCGTTCTTCTGCGTCCCGTTTCTCCACCCCTTCCCCTCCC
CCTTCCCCCGCTTTTTTCCCCCATTTTCCCGCCCCCTATCCCTTTCCCCC
GTTTCTCGCCCTTTTCCTTCCGTTTTTTCTTTTTTCCTCCCCCTCCCCTT
TTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_o16.b1 MSMg01no094_o16.b1 CHROMAT_FILE:
MSMg01no094_o16.b1 PHD_FILE: MSMg01no094_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:45 2005
         (371 letters)



>mm_chr1_31703230_31704003
          Length = 774

 Score =  673 bits (348), Expect = 0.0
 Identities = 362/368 (98%), Gaps = 3/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcactttcagcccactttctccattttatccactctacgacctcagtggctgag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaattctcactttcagtccactttctccattttatccactctacgacctcagtggctgag 700

                                                                       
Query: 65  atagtaccactcactttcaagggtgggttgtcctcagtcacagttttctagaagcatgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atagtaccactcactttcaagggtgggttgtcctcagtcacagttttctagaagcatgat 640

                                                                       
Query: 125 cagagactcatccaaagggccatttcatccagagcattctaaagcccaatgaggatcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cagagactcatccaaagggccatttcatccagagcattctaaagcccaatgaggatcaac 580

                                                                       
Query: 185 catcaataactaaagacccagggtaacagtgctgggaggttggtcttattgaaatgttct 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 579 catcaaaaactaaagacccagggtaacagtgctgggaggttggtcttattgaagtgttct 520

                                                                       
Query: 245 ggtctgttatcaggaatggattaatactgat---aaaaaaaaaaagatgttaccacacta 301
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 519 ggtctgttatcaggaatggattaatactgataaaaaaaaaaaaaagatgttaccacacta 460

                                                                       
Query: 302 ttcactatgctctctgctttgttgtttttctgcctggtgaagacagagtatgggtctttg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttcactatgctctctgctttgttgtttttctgcctggtgaagacagagtatgggtctttg 400

                   
Query: 362 tctttctg 369
           ||||||||
Sbjct: 399 tctttctg 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 774
Length adjustment: 9
Effective length of query: 362
Effective length of database: 765
Effective search space:   276930
Effective search space used:   276930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)