BAC Information

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BAC

Clone NameMSMg01-095I04
Chromosome1 (Build37)
Map Location 133,771,301 - 133,856,065
singlet/doubletdoublet
Overlap geneNucks1
Upstream geneFaim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1
Downstream geneSlc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I04.T7 (MSMg01no095_i04.b1)MSMg01-095I04.TJ (MSMg01no095_i04.g1)
ACCAG312406AG312407
length733704
length of high quality
(start - end)
185 (44 - 228)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no095_i04.b1 PHD_FILE: MSMg01no095_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:33 2005CHROMAT_FILE: MSMg01no095_i04.g1 PHD_FILE: MSMg01no095_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,855,884 - 133,856,065)(133,771,301 - 133,771,590)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGTCATCCTTGTCTAGAATTAGTTCAATGTTTTTAAAAAATGATT
TTAAAGTTATATTTTCAAGGAAATGAATTTTTTTAAAAGATGTAGCCAAA
AAGGTGAATACTGGGTTTTGTTTTATGTTTGTTCAGGAGACTTATTTTTT
GTTGGTGGTGTTTGGGGTGTGTGTGTGTGTGCGCCCCCNCCCCCCCCCAA
CCCTCCCCTCCTCCCCCCTCCCTCTCCCCCCCCCCCCCCCTCCCCTCCCC
CCTTACTCTTCTTCCCCCTCCTTCTCTTCTTCCCATACTACCCAACCCCT
TCCTCCTTTCCCCCCCCCCCCCCCCCCCCCTTTTTTCCCCCCCTCACCCC
CCCCCCCCCCCCTCCCCCCCCATCCCCCCTCTACCCCCCCCACACCCCCC
CCCCCACCCCCTTCATCCCCCCCCCCCCCCCCCCCCCCTTTCCCCCTTCC
ACCCCCCCCCCTCCCCCCCCCCCTCTCCCCCCCCCCCCCTCCCTTTCCCC
CCCCCCTTATTCCCCCCTCCCCCTTCCCCTCCTCCTTCTTCCCTCTCTCC
CTCTCCTTCCCCCCCCCCCCCCTTCCCTCCCCCCCCCACCCCCTCCTCCC
CCCCCCTTCCCCCCCCTCGCCCTACCTTCCCCGCCTACCATCTCCCCCCC
CCCATCCCCCTACCTCCTTTCCCCCCTCCCCTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTATGAACCCGGTAAGTAGCTAGTGC
TTAACAGCCACAGAAAACAAATACGCACGAGCCTTGGCCTTAGGGTGGAG
AGAAGACACATTGAAAATCATTACATAATTCAAGTGCTGTAAACCAGGCA
GAAAGTTGTTACGGTTTCCCCAGAATGGTGATTTACAAACTACCCAAGGG
TAATCTCAGTGAATTTGAGACTGTAGGAAGGCCTGAAATTATTGGCTAAG
TCTTAAATAAGTGTCCCATATCTGGCTCATCAGTAGCCCTGGCTGTCCTG
GAACTCACTGTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCC
TCCGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGCT
TAGAGGAGCAATCTTAAATCTACTCAATGAAAATTTCCAGTAAAGCACGG
GAATGTGTTTTCAAAGGTTCCCAGGTTCGGCCAGGTTTGGGAACCAGTGC
TGGCAAGTGTGGTAAAGATGGAGACCATTGCCTTTTCTTTGGGACTCTTC
TTGGGCATCTGGATGTTCTGCTCAACTCTCCAGCGATTCTGATGTACACA
CTAGACTTTGAAAACCACTCTGCAGAGGTTGGAGAGATGGTTCAGAGGTT
AAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i04.b1 MSMg01no095_i04.b1 CHROMAT_FILE:
MSMg01no095_i04.b1 PHD_FILE: MSMg01no095_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:33 2005
         (185 letters)



>mm_chr1_133855681_133856265
          Length = 585

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgtcatccttgtctagaattagttcaatgtttttaaaaaatgattttaaag 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaattcagtgtcatctttgtctagaattagttcaatgtttttaaaaaatgattttaaag 326

                                                                       
Query: 64  ttatattttcaaggaaatgaatttttttaaaagatgtagccaaaaaggtgaatactgggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatattttcaaggaaatgaatttttttaaaagatgtagccaaaaaggtgaatactgggt 266

                                                                       
Query: 124 tttgttttatgtttgttcaggagacttattttttgttggtggtgtttggggtgtgtgtgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgttttatgtttgttcaggagacttattttttgttggtggtgtttggggtgtgtgtgt 206

             
Query: 184 gt 185
           ||
Sbjct: 205 gt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no095_i04.g1 MSMg01no095_i04.g1 CHROMAT_FILE:
MSMg01no095_i04.g1 PHD_FILE: MSMg01no095_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:33 2005
         (290 letters)



>mm_chr1_133771101_133771790
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttatgaacccggtaagtagctagtgcttaacagccacagaaaacaaatacgcacgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttatgaacccggtaagtagctagtgcttaacagccacagaaaacaaatacgcacgagc 260

                                                                       
Query: 61  cttggccttagggtggagagaagacacattgaaaatcattacataattcaagtgctgtaa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cttggccttagggtggagagaagacacactgaaaatcattacataattcaagtgctgtaa 320

                                                                       
Query: 121 accaggcagaaagttgttacggtttccccagaatggtgatttacaaactacccaagggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaggcagaaagttgttacggtttccccagaatggtgatttacaaactacccaagggta 380

                                                                       
Query: 181 atctcagtgaatttgagactgtaggaaggcctgaaattattggctaagtcttaaataagt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctcagtgaatttgagactgtaagaaggcctgaaattattggctaagtcttaaataagt 440

                                                             
Query: 241 gtcccatatctggctcatcagtagccctggctgtcctggaactcactgtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcccatatctggctcatcagtagccctggctgtcctggaactcactgtg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)