BAC Information

Click to search

BAC

Clone NameMSMg01-095I12
Chromosome1 (Build37)
Map Location 67,065,066 - 67,215,801
singlet/doubletdoublet
Overlap geneLancl1, Cps1
Upstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I12.T7 (MSMg01no095_i12.b1)MSMg01-095I12.TJ (MSMg01no095_i12.g1)
ACCAG312422AG312423
length710715
length of high quality
(start - end)
580 (64 - 643)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no095_i12.b1 PHD_FILE: MSMg01no095_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:35 2005CHROMAT_FILE: MSMg01no095_i12.g1 PHD_FILE: MSMg01no095_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,215,301 - 67,215,801)(67,065,066 - 67,065,357)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATCCGCGGAATT
CTAGCATGTAGCCGCTATATTAATATATTTTAGAACTACATATACATATT
TTGCTTTAAGTAAATAACTCCAAAGTCCTGAATGTGAAAAGACACCTTTC
ATATTAAATATGTTGCCTTTTGTGTTTATAATATGGGCAACTTCAGAAAA
ACTACATCTAAAGTTGTTGGCTTATAAACCTGTCACGTACAAGTGCCTAG
GTCTATTTAATTGTATTTATCTGCTTTCAACTTTTTAATATCAACAATTT
TAAATCTTATTCTATTTTAATTCAAAAATAAAAAAATAAAAAGCTACAAA
TTGTGTGAGACTAAGATACCCCTGCACATGGCTGCACAACAATAATGTCA
AATTCATCTTGCCTGCTGTACAGATGTCCTAGCCATCCTGCGTCCTTGTT
GAGAGTCATCACTGAGTCTCGGTGTGGCCATCTATGGTTCTTTAGAATCA
GAATATGGACAAACATCTCTGGAGCAAGGTTTTATGTGTTTATCTATGTT
TTATGTAGAACATCTTTTTTAGGGAAGATAGTTGCATTAAATCTCTCAGA
ATGTATTTAATGATGAATTAATGTGCTTTTGATAAAAAACAAACTATTAG
AATTCCACCCTCCCTTGCATTTTTGTTTGTGTGTTGGCAAAATCCACTCA
TATTATTAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGTGAGACTGAAGAATACCGCCTT
AGAGAGCTCAGATGCCAACTGGCTTTAACACATAAGAAAGGTAGGTTCTA
TGTTTCAGGCTTAAGTAAGCATCCAACAGTTCTGCACTGGCCAATCATGT
ATCAGCAAACTGCAATGGAAGAAACTTACTTTGCATAGACTTTTAGAGAA
ATAATTGCTTTGTATCCTCTACCATTCTGAACAAGCTTGGTGACAGTTCT
TTAAAATTCATATTTTAATTGTATTTTTTGTACACCCATGAGTTTAATGA
AGGTTCAAGAACATGGTTTTGGTTGCCACCCACGCATGGGAATCTTATCA
GCTGCTGTCCCCCACCCTCTGCAGCCATTGACCACTGANAAGATGATCAG
GGCTGCTGCAGCCTGTTACTCCTTCCCTCTCCATGAAAGGATGCTGGCAA
GACTGATGTGCAGGGCTCTCGTAGGTAATCACAGCTGCTAAGAGTTCAAG
GGAGCAATGGCTATGCCACACCCACAGGGTAGGATGCCACACCCACAGGG
TAGGATTCCAGCGGTTCCCTAACCTCTCCTTTCTAGTTCTCTTGATATTG
TCTGAGACTGAAGGGGTGACATGAAGCCTTCTCAGGGCTAAATGCTTATC
AGGAACTTATTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i12.b1 MSMg01no095_i12.b1 CHROMAT_FILE:
MSMg01no095_i12.b1 PHD_FILE: MSMg01no095_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:35 2005
         (580 letters)



>mm_chr1_67214822_67215801
          Length = 980

 Score =  961 bits (497), Expect = 0.0
 Identities = 500/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  cacctttcatattaaatatgttgccttttgtgtttataatatgggcaacttcagaaaaac 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 cacctttcatattaaatatgttgccttttgtgtttataatatgggcaacttcagaaaaac 921

                                                                       
Query: 140 tacatctaaagttgttggcttataaacctgtcacgtacaagtgcctaggtctatttaatt 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tacatctaaagttgttggcttataaacctgtcacgtacaagtgcctaggtctatttaatt 861

                                                                       
Query: 200 gtatttatctgctttcaactttttaatatcaacaattttaaatcttattctattttaatt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gtatttatctgctttcaactttttaatatcaacaattttaaatcttattctattttaatt 801

                                                                       
Query: 260 caaaaataaaaaaataaaaagctacaaattgtgtgagactaagatacccctgcacatggc 319
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 800 caaaaataaaaaaataaaaagctacaaattgtgtgagactaagatacccctgcaaatggc 741

                                                                       
Query: 320 tgcacaacaataatgtcaaattcatcttgcctgctgtacagatgtcctagccatcctgcg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcacaacaataatgtcaaattcatcttgcctgctgtacagatgtcctagccatcctgcg 681

                                                                       
Query: 380 tccttgttgagagtcatcactgagtctcggtgtggccatctatggttctttagaatcaga 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tccttgttgagagtcatcactgagtctcggtgtggccatctatggttctttagaatcaga 621

                                                                       
Query: 440 atatggacaaacatctctggagcaaggttttatgtgtttatctatgttttatgtagaaca 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atatggacaaacatctctggagcaaggttttatgtgtttatctatgttttatgtagaaca 561

                                                                       
Query: 500 tcttttttagggaagatagttgcattaaatctctcagaatgtatttaatgatgaattaat 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttttttagggaagatagttgcattaaatctctcagaatgtatttaatgatgaattaat 501

                                
Query: 560 gtgcttttgataaaaaacaaa 580
           |||||||||||||||||||||
Sbjct: 500 gtgcttttgataaaaaacaaa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_i12.g1 MSMg01no095_i12.g1 CHROMAT_FILE:
MSMg01no095_i12.g1 PHD_FILE: MSMg01no095_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:35 2005
         (293 letters)



>mm_chr1_67064866_67065558
          Length = 693

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtgagactgaagaataccgccttagagagctcagatgccaactggctttaacacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtgagactgaagaataccgccttagagagctcagatgccaactggctttaacacata 260

                                                                       
Query: 61  agaaaggtaggttctatgtttcaggcttaagtaagcatccaacagttctgcactggccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggtaggttctatgtttcaggcttaagtaagcatccaacagttctgcactggccaa 320

                                                                       
Query: 121 tcatgtatcagcaaactgcaatggaagaaacttactttgcatagacttttagagaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgtatcagcaaactgcaatggaagaaacttactttgcatagacttttagagaaataa 380

                                                                       
Query: 181 ttgctttgtatcctctaccattctgaacaagcttggtgacagttctttaaaattcatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttgtatcctctaccattctgaacaagcttggtgacagttctttaaaattcatatt 440

                                                               
Query: 241 ttaattgtattttttgtacacccatgagtttaatgaaggttcaagaacatgg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattgtattttttgtacacccatgagtttaatgaaggttcaagaacatgg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)