Query= MSMg01no096_b10.b1 MSMg01no096_b10.b1 CHROMAT_FILE:
MSMg01no096_b10.b1 PHD_FILE: MSMg01no096_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:19 2005
(571 letters)
>mm_chr1_26509340_26510310
Length = 971
Score = 1065 bits (551), Expect = 0.0
Identities = 566/571 (99%)
Strand = Plus / Plus
Query: 1 tgatgctaatcacatttcatgtggattctgcgaataaatttaacacggttatagaacaaa 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgctaatcacatttcacgtggattctgcgaataaatttaacacggttatagaacaaa 260
Query: 61 acttatatttgaaaattatgattctctttccaaatcttcattctttcctcttgacattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttatatttgaaaattatgattctctttccaaatcttcattctttcctcttgacattaa 320
Query: 121 aaccagaataaaggctacatctggtcactgcaacctgcaacaacttgaaagtgacattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccagaataaaggctacatctggtcactgcaacctgcaacaacttgaaagtgacattga 380
Query: 181 acttattgtccttgaaaaaaagttcaaataaattgctttaaaaattgacctgaattcgga 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 acttattgtccttgaaaaaaagttcaaataaattgctttaaaaattgtcctgaattcgga 440
Query: 241 gttataaggaaggtatttaggatgcctgttttgaatcgtattgacatgctaatatcattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttataaggaaggtatttaggatgcctgttttgaatcgtattgacatgctaatatcattt 500
Query: 301 ctgaaagactttggtgatgcacatgaggattattagttggaagttacactaagaagcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaaagactttggtgatgcacatgaggattattagttggaagttacactaagaagcaat 560
Query: 361 acaaatggaattttaatgtggggaaatgacaacctaggaagaattaaaaaaattctacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaatggaattttaatgtggggaaatgacaacctaggaagaattaaaaaaattctacta 620
Query: 421 tgaaagtgtttctgactttttaagactgtggttagagatttttaaaaaaataattgttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaagtgtttctgactttttaagactgtggttagagatttttaaaaaaataattgttta 680
Query: 481 tgtatatagcaaatatgtactcatattttattaattattatacactatatttattacatt 540
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 681 tgtatatagtaaatatgtactcacattttattaattattatatactatatttattacatt 740
Query: 541 tatcatgagtacactatcatttattataagt 571
|||||||||||||||||||||||||||||||
Sbjct: 741 tatcatgagtacactatcatttattataagt 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_b10.g1 MSMg01no096_b10.g1 CHROMAT_FILE:
MSMg01no096_b10.g1 PHD_FILE: MSMg01no096_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:19 2005
(588 letters)
>mm_chr1_26575595_26576580
Length = 986
Score = 1110 bits (574), Expect = 0.0
Identities = 584/588 (99%), Gaps = 2/588 (0%)
Strand = Plus / Minus
Query: 1 aaagaaatatgattaatttcaataaatatctcttgcttggatttgaatctaaataaataa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaagaaatgtgattaatttcaataaatatctcttgcttggatttgaatctaaataaataa 727
Query: 61 ttttttcacctaaaacctagaactgcagttgacctgtagctacatgagaaaatctctaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttttttcacctaaaacctagaactgcagttgacctgtagctacatgagaaaatctctaca 667
Query: 121 tgctataaaggttcagaagttctctatgtagtttaaaaatatgaactgacatacacaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgctataaaggttcagaagttctctatgtagtttaaaaatatgaactgacatacacaggc 607
Query: 181 taaactatctgtttggagtttatttaaaaaaaaactttcaattctaaatgagcatattaa 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 606 taaactatctgtttggagtttattt--aaaaaaactttcaattctaaatgagcatattaa 549
Query: 241 tactttaagtataaaaattaagtcactaattataaggatgtgaatgatgaagaagagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tactttaagtataaaaattaagtcactaattataaggatgtgaatgatgaagaagagaag 489
Query: 301 gcatgttagagtctttatttccatatccattccaagacctgcaaaattctgttaaagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gcatgttagagtctttatttccatatccattccaagacctgcaaaattctgttaaagttt 429
Query: 361 taaaaataatgtgctgcttctctttagaaataaaatgagctaaataaataaatggatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taaaaataatgtgctgcttctctttagaaataaaatgagctaaataaataaatggatgga 369
Query: 421 caactcagatgaaaagaatggttattgtaattagggaagacatgagttttctgaagtagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caactcagatgaaaagaatggttattgtaattagggaagacatgagttttctgaagtagg 309
Query: 481 agaaatacaatcaataaataataaaggtaagggaacagggctaatccaggggacaggcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaatacaatcaataaataataaaggtaagggaacagggctaatccaggggacaggcat 249
Query: 541 tgatatctggtgcaactgagtgttatggatgatagctgttctactctt 588
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 248 tgatatctggtgcaactgagtgttatggatgaaagctgttctactctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 986
Length adjustment: 10
Effective length of query: 578
Effective length of database: 976
Effective search space: 564128
Effective search space used: 564128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
