BAC Information

Click to search

BAC

Clone NameMSMg01-096F05
Chromosome1 (Build37)
Map Location 40,440,832 - 40,441,288
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2
Downstream geneIl1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F05.T7 (MSMg01no096_f05.b1)MSMg01-096F05.TJ (MSMg01no096_f05.g1)
ACCAG313029AG313030
length701792
length of high quality
(start - end)
456 (49 - 504)47 (219 - 265)
definitionCHROMAT_FILE: MSMg01no096_f05.b1 PHD_FILE: MSMg01no096_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:38 2005CHROMAT_FILE: MSMg01no096_f05.g1 PHD_FILE: MSMg01no096_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTTCGAGAATCCGCGGAATTCAGATGCTGTTGCCGTCAGAAG
TGTGGGATTTCCTAGGGCTGGATGGATGAGCTGCCTAACGTGGGTTCTGG
GAGTGGAACGGAGGTCCTCTGCAAATGCAGACCGTGCTCTTAACCTCTGG
GTGGGGTCTCCTGTCATTGATCCTGGTTTTATATCTAAGGTTTCAAATAC
GATTAAGACATGAAGATTGGAAAATAATGTGTGAAGGAAAGAGACAGAAA
AAATGCAAAAGGAGAGGACTGGAGAGATGGCTCAGCAGTTAGGAGCACTG
ACTGCTCTTCCATAGGTCCTGAGTTCATTTTTAGCAACCACAAAGTAGCT
CACAACCATTTCTAATGGGATCCAGTGCCCTCTTCTGGTGTGTCTGAAGA
CAGTGTCAGTGTACTCATATAAGTAAAATAAACCTTTAAAAAATGCAAAG
GAAAAGTGGTCCTTTGAATTCAGAACTCAAAATCCAAATAGGTCTGACAG
AGCCTGACAGTGCATGAGGTGTGGGCTTTCTGGGAAGGAACCGGGACAGG
GACCATTATTCTTCCAGCTCTTTCTTCAGCGCAGCCTAAGGTGAAGTTCC
CTTCCCAAAGAGTGATCCCCTAGCTAGGCCGCTGCCTCCCCCACCTGCAT
TCTCTCTTATATTTTGGGAACCTTGTAATGTCAGGAGTTCTCCAAGTCCA
A
TCCCCTGCCTTTGGGGGCGGGCGTTNNTTCCTCCCCTCCCTCAACCATCC
TNCACGATGAAGTGGGTAGCCTGGNGGCCGNCTGGCCTTTCCGGACCCGC
NAACNANAGAAGGGACTTTCCCAAAAGAGGCCNCCAAGNGNCGGGAGCAG
NNCCGGNGGCCCAAGAAAGAACNCCNCCCGGGAGGCCAAAGAGCCGGAGA
GGGCCANAGAGAGCAGCCACAAGACAGGAGGAAAAGNCAGGGCAAGAGAC
CGAGACAGACAGCNGAAAAACNNACCAGGCGACCGCGAAGACCAAGAACA
CNCCAGAAGGGAATAAGAAGAAAAGNCCAGAGACAAAGCNNNAGAGAGCC
CACNAAGAGCCGACACGGAGCAGAGAGAATTTTTTTTTCAGNAGACCGCC
NGANAANCCGACGGAGGGAGGACTCCACGCCCCCCCACCAAGAAAGACGN
AGAGGGNAGACAAAGAGACCGGCCCCCCNACGNAGACAGAGACCAAGGCC
CAGCGCGCGCCACNCAAAGCCCCCGCGAACAGAACCCACAAGAAAGGGCA
CAGAAACACGGGGACCACCAGCGGACCCCACCAGCCCAACCAGCCACAGG
AAAGACCAACCGGAAGGAGAGGCAGAGAGGGAAGCCCAAAGGACCGGGCC
CGGGCCGAAAAAGGAGCAGAAGAAAACGAAAGGAAGGAGGGGAAGCAACC
CCAGAGCCCCCCGCGAGGAAAGCCGGCTCTTCTATCGTGTACGATCCCCC
GGCACTTTCACCCATTCATTTCTCTTGTTTCGCTATTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f05.b1 MSMg01no096_f05.b1 CHROMAT_FILE:
MSMg01no096_f05.b1 PHD_FILE: MSMg01no096_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:38 2005
         (456 letters)



>mm_chr1_40440632_40441487
          Length = 856

 Score =  845 bits (437), Expect = 0.0
 Identities = 452/457 (98%), Gaps = 1/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtgggatttcctagggctggatggatgagctgcctaacgtgggttctgggagtggaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agtgtggtatttcctagggctggatggatgagctgcctaacgtgggttccgggagtggaa 260

                                                                       
Query: 61  cggaggtcctctgcaaatgcagaccgtgctcttaacctctgggtggggtctcctgtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggaggtcctctgcaaatgcagaccgtgctcttaacctctgggtggggtctcctgtcatt 320

                                                                       
Query: 121 gatcctggttttatatctaaggtttcaaatacgattaagacatgaagattggaaaataat 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gatcctggttttatatctaaggtttcaaatacaattaagacatgaagattggaaaataat 380

                                                                       
Query: 181 gtgtgaaggaaagagacagaaaaaatgcaaaaggagaggactggagagatggctcagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgaaggaaagagacagaaaaaatgcaaaaggagaggactggagagatggctcagcag 440

                                                                       
Query: 241 ttaggagcactgactgctcttccataggtcctgagttca-tttttagcaaccacaaagta 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttaggagcactgactgctcttccataggtcctgagttcaatttttagcaaccacaaagta 500

                                                                       
Query: 300 gctcacaaccatttctaatgggatccagtgccctcttctggtgtgtctgaagacagtgtc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcacaaccatttctaatgggatccagtgccctcttctggtgtgtctgaagacagtgtc 560

                                                                       
Query: 360 agtgtactcatataagtaaaataaacctttaaaaaatgcaaaggaaaagtggtcctttga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgtactcatataagtaaaataaacctttaaaaaatgcaaaggaaaagtggtcctttga 620

                                                
Query: 420 attcagaactcaaaatccaaataggtctgacagagcc 456
           ||||||||||||||||||||| |||||||||||||||
Sbjct: 621 attcagaactcaaaatccaaacaggtctgacagagcc 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)