Query= MSMg01no096_j01.b1 MSMg01no096_j01.b1 CHROMAT_FILE:
MSMg01no096_j01.b1 PHD_FILE: MSMg01no096_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:57 2005
(419 letters)
>mm_chr1_62375218_62376036
Length = 819
Score = 793 bits (410), Expect = 0.0
Identities = 416/418 (99%)
Strand = Plus / Plus
Query: 1 agaagctttgctgagatgaagtgaagcagtattttcctggactctgacccttccctgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagctttgctgagatgaagtgaagcagtattttcctggactctgacccttccctgtaa 260
Query: 61 tcctgcaaggtctcagaacaagaaaggctgatcatagacttccccaagagagatgttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgcaaggtctcagaacaagaaaggctgatcatagacttccccaagagagatgttatt 320
Query: 121 aatagaaatgtcaccttcgtgtaacctctcttcccgctggcaaggactcttcgggctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aatagaaatgtcaccttcgtgtaacctctcttcccgctggcaaggactcttagggctgag 380
Query: 181 ttatagggaaattccagcatcttgtcagatttcacaacaacattaagtggaacttccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatagggaaattccagcatcttgtcagatttcacaacaacattaagtggaacttccttt 440
Query: 241 tcatatttgtcacctcatttattttgtgtgtccccacgttattagttttactgcccatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatatttgtcacctcatttattttgtgtgtccccacgttattagttttactgcccatta 500
Query: 301 atcattacctataacaaaatatagttaaaatatgcctaggaggcagcaggaatggttctg 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcattacatataacaaaatatagttaaaatatgcctaggaggcagcaggaatggttctg 560
Query: 361 aacatgacagtcataactaagccaagggcggcaaacatctaatttgttcacttgggga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatgacagtcataactaagccaagggcggcaaacatctaatttgttcacttgggga 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_j01.g1 MSMg01no096_j01.g1 CHROMAT_FILE:
MSMg01no096_j01.g1 PHD_FILE: MSMg01no096_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:58 2005
(345 letters)
>mm_chr1_62507443_62508184
Length = 742
Score = 640 bits (331), Expect = 0.0
Identities = 341/345 (98%), Gaps = 3/345 (0%)
Strand = Plus / Minus
Query: 1 cctttttggtgacacatgcatatactgaggacaggtcattgagaaagccaacagcccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cctttttggtgacacatgcatatactgaggacaggtcattgagaaagccaacagcccctt 483
Query: 61 acatcaccagtgtcccccaccagagacagtctaactaacccagacaacgcctgctgtcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acatcaccagtgtcccccaccagagacagtctaactaacccagacaacgcctgctgtcca 423
Query: 121 cagcagttctatcagagagctgactagcaattaggaaacaaggaatgagcccactcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cagcagttctatcagagagctgactagcaattaggaaacaaggaatgagcccactcattt 363
Query: 181 ccagtgactgaaggaaaaagattcacatacattggaatgtatagggtataaaggaggctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccagtgactgaaggaaaaagattcacatacattggaatgtatagggtataaaggaggctt 303
Query: 241 tgtgaaatatcttatatagtacatacatatgatattgagaattacagttaagggtgtttt 300
||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 302 tgtgaaagatcttata--gtacatacatatgatattgagaattacagt-aagggtgtttt 246
Query: 301 ggtattttgatggacatggtggatatctgtatcgggatataattt 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggtattttgatggacatggtggatatctgtatcgggatataattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 742
Length adjustment: 9
Effective length of query: 336
Effective length of database: 733
Effective search space: 246288
Effective search space used: 246288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
